Table 3.
Mapping matrix of the candidate genes based on the transcriptome and the expression ratio of gene regulation
| Transcript | Chra | MLb | MMc | Gaps | Score | RAP-DBd | Regulation | Ratioe |
|---|---|---|---|---|---|---|---|---|
| Os01t0372500 | 1 | 1589 | 0 | 0 | 3102 | Os01g0372500 | Up | 25.2 |
| Os01t0633500 | 1 | 1088 | 0 | 0 | 2074 | Os01g0633500 | Up | 18.1 |
| Os04t0662600 | 4 | 2796 | 0 | 0 | 5204 | Os04g0662600 | Up | 36.0 |
| Os06t0192100 | 6 | 1120 | 0 | 0 | 2161 | Os06g0192100 | Up | 17.6 |
| Os07t0217600 | 7 | 2729 | 0 | 0 | 5327 | Os07g0217600 | Down | 0.01 |
| Os09t0343200 | 9 | 6617 | 0 | 0 | 13,120 | Os09g0343200 | Down | 0.01 |
| Os10t0395400 | 10 | 1614 | 0 | 0 | 2926 | Os10g0395400 | Up | 27.7 |
| Os11t0233201 | 11 | 1740 | 0 | 0 | 3354 | Os11g0233201 | Down | 0.01 |
| Os12t0222650 | 12 | 366 | 0 | 0 | 684 | Os12g0222650 | Up | 25.3 |
aChromosome
bMatching length
cMismatch
dPredicted gene name (http://rapdb.dna.affrc.go.jp/)
eGene expression ratio compared to non-anthocyanin rice