Table 8.

Correlations between observed phenotypes corrected for fixed effects and breeding values predicted based on the best three or ten SNPs according to the single marker regression and to the Bayesian Power Lasso.

	Top 3 SNPs				Top 10 SNPs
SNP selection	Single marker regression		Bayesian Power Lasso		Single marker regression		Bayesian Power Lasso
Effect re-estimation	Single marker regression	SNP-BLUP	Bayesian Power Lasso	SNP-BLUP	Single marker regression	SNP-BLUP	Bayesian Power Lasso	SNP-BLUP
Grain protein content	0.21	0.27	0.11	0.14	0.34	0.38	0.25	0.28
Zeleny sedimentation	0.61	0.61	0.59	0.59	0.62	0.66	0.68	0.69
Test weight	0.26	0.22	0.16	0.18	0.42	0.46	0.19	0.29
Falling number	0.17	0.28	0.17	0.14	0.41	0.36	0.34	0.17
Thousand-kernel weight	0.24	0.21	0.09	0.24	0.31	0.43	0.18	0.43