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. 2018 Feb 6;19:35. doi: 10.1186/s12859-018-2043-3

Table 1.

The HQI8 subset of amino acid indices from the AAindex database

Entry name Description
BLAM930101 Alpha helix propensity of position 44 in T4 lysozyme [99].
BIOV880101 Information value for accessibility; average fraction 35% [100].
MAXF760101 Normalized frequency of alpha-helix [101].
TSAJ990101 Volumes including the crystallographic waters using the ProtOr [102].
NAKH920108 AA composition of MEM of multi-spanning proteins [103].
CEDJ970104 Composition of amino acids in intracellular proteins (percent) [104].
LIFS790101 Conformational preference for all beta-strands [105].
MIYS990104 Optimized relative partition energies - method C [106].