Table 1.
Number of transcripts | 147,910 |
Total assembly length (Mb) | 46.7 |
Number of trinity ‘genes' | 71,093 |
N50 (bp) | 1,085 |
Maximum contig size (bp) | 11,112 bp |
Minimum contig size (bp) | 201 bp |
Average contig length (bp) | 658 bp |
Predicted proteins | 78,625 |
BUSCO score | C: 68%, F: 14%, M: 18% |
The assembly was generated from H. glycines pre-parasitic second-stage juvenile samples as well as parasitic second-stage juvenile samples from susceptible and resistant host interactions using the Trinity de novo transcriptome assembly tool. The transcriptome was assessed for completeness using the tool BUSCO (benchmarking universal single-copy orthologs) to identify complete (C), fragmented (F), and missing (M) sequences representing conserved orthologs found in all eukaryotes.