Table 1.
Nucleotide sequence identities of RVA/Human-wt/GTM/2009726790/2009/G8P[14] strain to closely related strains.
| Gene | % identity to closest related strain | Closely related strain | Accession number | RotaC classification | Predominant host strain in phylogenetic lineage | % identity to RotaTeq vaccine strain |
|---|---|---|---|---|---|---|
| NSP1 | 95.0 | Bovine Dai-10 | AB573074 | A13 | * Mixed | 74.4 |
| NSP2 | 97.6 | Simian-RRV G3P3 | EU636931 | N2 | * Mixed | 95.7 |
| NSP3 | 98.1 | Bovine-BRV-106 | AB748599 | T6 | Bovine | 97.4 |
| NSP4 | 97.9 | Bovine-CBNU-1 | AF166353 | E2 | * Mixed | 92.9 |
| NSP5 | 96.1 | Guanaco/Arg/Chubut/1999 G8P[14] strain | FJ347110 | H3 | * Mixed | 94.8 |
| VP1 | 96.3 | Bovine-WC3 | GU565041 | R2 | * Mixed | 96.4 |
| VP2 | 96.9 | Bovine-Sun9 | AB374144 | C2 | * Bovine | 95.1 |
| VP3 | 95.0 | Bovine-CP-1 | FJ560906 | M2 | * Bovine | 92.2 |
| VP4 | 97.8 | Bovine-Tottori-SG-G15P[14] | AB853893 | P[14] | * Bovine | 69.0 |
| VP6 | 97.8 | Bovine-MVS-BRV4 | KC215501 | I2 | * Mixed | 97.1 |
| VP7 | 96.6 | Guanaco/Arg/Chubut/1999 G8P[14] strain | FJ347105 | G8 | * Mixed | 72.3 |
*
More than one predominant host strain represented in the lineage.