Table 2.
Summary of the complete PCV genomes sequenced used in this study
| Strain name | Accesion Number | Country | Collection Date | Genotype | Length(nt) | Source | Linical condition/tissue origin of isolation |
|---|---|---|---|---|---|---|---|
| BJ-1 | FJ475129 | Beijing, China | 07/5/2009 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| PCV1 | AY193712 | Zhijiang, China | 17/2/2003 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| PCV1-Hun | KJ408799 | Hungary | 16/4/2014 | PCV1 | 1759bp | GenBank | lymph nodes, spleen, lung and other tissue materials |
| PCV1-Eng-1970 | KJ408798 | United Kingdom | 16/4/2014 | PCV1 | 1759bp | GenBank | lymph nodes, spleen, lung and other tissue materials |
| PCV1-XFD-Beijing | KC447455 | Beijing, China | 16/4/2013 | PCV1 | 1759bp | GenBank | lymph nodes, spleen, lung and other tissue materials |
| PCV1/G | JN398656 | Harbin, China | 31/8/2011 | PCV1 | 1759bp | GenBank | Contaminated PK-15 cell |
| HZ2006 | EF533941 | Hangzhou, China | 01/5/2007 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| NMB | GU799575 | USA | 28/2/2011 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| Jiangsu | GU722334 | Jiangsu, China | 03/3/2010 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| Tian Jin | GU371908 | Tianjin, China | 06/2/2010 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| ZY | KF732857 | Guiyang, China | 08/1/2014 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| DY | KC924758 | Guiyang, China | 13/8/2013 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| GY | KC894933 | Guiyang, China | 06/8/2013 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| Guiyang | KC878437 | Guiyang, China | 30/7/2013 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| ZZ-3 | KC733436 | Zhengzhou, China | 18/6/2013 | PCV1 | 1759bp | GenBank | Lymph node |
| NJ03 | JX566507 | Nanjing, China | 06/5/2013 | PCV1 | 1759bp | GenBank | Congenital tremors/lymph nodes, spleen, lung and other tissue materials |
| CT-PCV-P7 | AY099501 | USA | 19/5/2009 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| CCL33-UGent | JN133303 | Belgium | 12/11/2011 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| 3384 | JN133302 | United Kingdom | 12/11/2011 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| HRB-09 | GQ449671 | Beijing, China | 24/10/2011 | PCV1 | 1758bp | GenBank | PK-15 cell culture |
| PCV3_Rotarix_con1 | HM143844 | USA | 20/6/2010 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| SC-10 | DQ659154 | Guangdong, China | 19/6/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-9 | DQ659153 | Guangdong, China | 19/6/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-8 | DQ494788 | Guangdong, China | 06/5/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-7 | DQ494787 | Guangdong, China | 06/5/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-5 | DQ472016 | Guangdong, China | 24/4/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-6 | DQ472015 | Guangdong, China | 24/4/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-4 | DQ472014 | Guangdong, China | 24/4/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-3 | DQ472013 | Guangdong, China | 24/4/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| SC-2 | DQ472012 | Guangdong, China | 24/4/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| NT70719 | FJ159693 | Jiangsu, China | 23/9/2008 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| TZ70717 | FJ159692 | Jiangsu, China | 23/9/2008 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| SD-73-3 | KJ746930 | Shandong, China | 15/7/2014 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| TJ1307 | KJ808815 | Beijing, China | 18/8/2014 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| SD-73-1 | KJ746929 | Shandong, China | 15/7/2014 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| PK | DQ650650 | Jiangsu, China | 08/7/2006 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| Aust4 | AY754015 | Australia | 21/3/2014 | PCV1 | 1759bp | GenBank | PK-15 cell culture |
| Aust3 | AY754014 | Australia | 21/3/2014 | PCV1 | 1759bp | GenBank | PK-15 cell culture |
| SC-1 | DQ358813 | Guangdong, China | 01/3/2006 | PCV1 | 1759bp | GenBank | Pig serum |
| WB-H-8 | DQ648032 | Hungary | 02/7/2006 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| YZ70719 | FJ159691 | Jiangsu, China | 23/9/2008 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| YZ70722 | FJ159689 | Jiangsu, China | 23/9/2008 | PCV1 | 1759bp | GenBank | Lymph nodes, spleen, lung and other tissue materials |
| PCV2a | AF027217 | Canada | 19/3/2009 | PCV2a | 1768bp | GenBank | Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials |
| PCV2b | AF112862 | Canada | 12/10/2005 | PCV2b | 1768bp | GenBank | Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials |
| PCV2c | AF109398 | Canada | 23/7/2001 | PCV2c | 1768bp | GenBank | Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials |
| PCV2d-1(P2425NT) | JX099786 | Viet Nam | 01/5/2014 | PCV2d-1 | 1767bp | GenBank | Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials |
| PCV2d-2(CS5) | KX161667 | Hunan, China | 05/6/2016 | PCV2d-2 | 1767bp | GenBank | Suspected PMWS/ lymph nodes, spleen, lung and other tissue materials |
| GXdx115 | KX827778 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXdx105 | KX827779 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXdx64 | KX827780 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXdx51 | KX827781 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXbb158 | KX827782 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXyl225 | KX827783 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXyl224 | KX827784 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh19 | KX827785 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh12 | KX827786 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh11 | KX827787 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh10 | KX827788 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh7 | KX827789 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXlsh2 | KX827790 | Guangxi, China | 00/7/2015 | PCV1 | 1759bp | This study | Lungs, spleen, and lymph nodes |
| GXdx84 | KY437725 | Guangxi, China | 00/7/2015 | PCV1/2d | 1757bp | This study | Lungs, spleen, and lymph nodes |