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. 2018 Feb 7;17:71. doi: 10.1186/s12936-018-2215-7

Table 1.

Estimates of DNA sequence polymorphism and tests of neutrality at PfAMA-1 among Plasmodium falciparum Myanmar isolates

Fragment Segregating sites (S) Singleton variable sites Parsimony informative sites Total no. of mutations K H Hd ± SD π ± SD dN − dS Tajima’s D
5ʹ-Terminal 5 1 4 5 1.253 8 0.702 ± 0.052 0.00282 ± 0.00027 − 0.00227 0.37596
(P > 0.1)
Domain I 37 4 33 38 9.796 27 0.912 ± 0.024 0.02120 ± 0.00161 0.02516 0.64221
(P > 0.1)
Domain II 12 4 8 12 2.234 12 0.860 ± 0.023 0.00752 ± 0.00057 0.00794 − 0.39855
(P > 0.1)
Domain III 13 5 8 13 3.275 14 0.871 ± 0.024 0.01629 ± 0.00080 0.01484 0.48627
(P > 0.1)
3ʹ-Terminal 8 2 6 8 1.987 10 0.761 ± 0.027 0.00581 ± 0.00047 0.00658 0.39702
(P > 0.1)
Full 78 16 62 79 19.886 37 0.948 ± 0.019 0.01064 ± 0.00051 0.01076 0.57189
(P > 0.1)

K, average number of pairwise nucleotide differences; H, number of haplotypes; Hd, haplotype diversity; π, observed average pairwise nucleotide diversity; dN, rate of non-synonymous mutations; dS, rate of synonymous mutations