Table 1.
Summary statistics for each center, for number of files before and after normalization.
| Raw | Fluidigm v1 | Fluidigm v2 | MATLAB-pass Fluidigm | MATLAB-all | |
|---|---|---|---|---|---|
| Number of files | |||||
| Center 1 | 6 | 4 | 4 | 4 | 6 |
| Center 2 | 6 | 4 | 5 | 4 | 6 |
| Center 3 | 6 | 0 | 0 | 0 | 6 |
| Center 4 | 6 | 6 | 6 | 6 | 6 |
| Center 5 | 6 | 6 | 6 | 6 | 6 |
| Center 6 | 6 | 6 | 6 | 6 | 6 |
| Total | 36 | 26 | 27 | 26 | 36 |
| Average CV - Frequency of Parent - all files all populations | |||||
| Center 1 | 11.5 | 11.0 | 11.1 | 11.6 | 14.3 |
| Center 2 | 9.1 | 10.2 | 11.3 | 12.4 | 9.8 |
| Center 3 | 12.8 | – | – | – | 16.2 |
| Center 4 | 11.5 | 11.7 | 9.7 | 10.8 | 11.6 |
| Center 5 | 13.9 | 14.1 | 15.1 | 14.9 | 30.0 |
| Center 6 | 13.2 | 15.5 | 14.8 | 16.2 | 13.9 |
| Average of all centers | 12.0 | 12.5 | 12.4 | 13.2 | 15.9 |
| Average CV - MSI - all files all populations | |||||
| Center 1 | 36.0 | 31.6 | 34.4 | 31.6 | 35.4 |
| Center 2 | 16.6 | 19.7 | 25.6 | 21.5 | 17.2 |
| Center 3 | 25.3 | – | – | – | 27.9 |
| Center 4 | 32.5 | 31.1 | 34.8 | 30.1 | 30.4 |
| Center 5 | 29.4 | 30.1 | 31.5 | 29.5 | 35.0 |
| Center 6 | 29.9 | 39.8 | 30.0 | 27.8 | 26.7 |
| Average of all centers | 28.3 | 30.5 | 31.3 | 28.1 | 28.8 |