Table 1.
Primer IDs | Primer Sequencea | Modificationsb | |
---|---|---|---|
Replicon | |||
TW4675F | 5’ GCTATGAGTTCCGGGACCTCAA 3’ | TW6196-Rluc | |
TW5168R | 5’ GGTGGCATCGCCATGCAA 3’ | ||
TWJRhRlucU | 5’ TTGCATGGCGATGCCACC ATGGCTTCCAAGGTGTACGAC 3′ | ||
TWhRlucL | 5’ AGAATTCAGCGCTGCTAGCTATTACTGCTCGTTCTTCAGCACG 3’ | ||
SWhRluc1U | 5’ TGCATCGCCCATGGGATCACCATGGCTTCCAAGGTGTACGAC 3’ | pSHEV3-Rluc | |
SWhRluc915L | 5’ CGGTTAACATATGCTAGCCTATTACTGCTCGTTCTTCAGCACG 3’ | ||
SWHEV4623U | 5’ CGCCGAAGGAGTCTCTTAAGGGT 3’ | ||
SWHEV5208L | 5’ GTCGTACACCTTGGAAGCCATGGTGATCCCATGGGCGATGCA 3’ | ||
Mutagenic | |||
HEV3MvaU | 5’ GTGAGGTCGGCATTTCGGATGCAATTGTCAATAACTTTTTCCTTG 3’ | V1213A | |
HEV3MvaL | 5’ CAAGGAAAAAGTTATTGACAATTGCATCCGAAATGCCGACCTCAC 3’ | ||
HEV3MqhU | 5’ GATCAGAACCTCGGGACTCTACATGCCTTCCCGCCGTCCTGCCAG 3′ | Q/H | |
HEV3MqhL | 5’ CTGGCAGGACGGCGGGAAGGCATGTAGAGTCCCGAGGTTCTGATC 3’ | ||
HEV3MspU | 5’ GTCTATGGGGGCCGGGCCTCATAGCCTCACTTATG 3’ | S605P | |
HEV3MspL | 5’ CATAAGTGAGGCTATGAGGCCCGGCCCCCATAGAC 3’ | ||
HEV3MivU | 5’ GCTTGTGCCGGCTGCACTGTTAGTCCTGGGATTG 3′ | I978V | |
HEV3MivL | 5’ CAATCCCAGGACTAACAGTGCAGCCGGCACAAGC 3’ | ||
HEV3MvaHU | 5’ GTGAGGTCGGCATTTCGGATGCTATTGTCAATAACTTTTTCCTTG 3’ | V1213A (2nd) | |
TWMavU | 5’ TGAGGTGGGTATCTCTGATGTTATTGTTAACAACTTCTTCC 3′ | A1213V TW6196 | |
TWMavL | 5’ GGAAGAAGTTGTTAACAATAACATCAGAGATACCCACCTCA 3′ | ||
HEV2MavU | 5’ GCGAGGTGGGCATCTCCGATGTGATCGTTAATAACTTTTTCCTTG 3’ | A1213V Sar55 | |
HEV2MavL | 5’ CAAGGAAAAAGTTATTAACGATCACATCGGAGATGCCCACCTCGC 3’ |
aSequences of primers
bRluc inserted into HEV genomes or amino acid mutation introduced by the primer