Table 4.
Top 50 transcripts significantly downregulated (depleted) in GFP+ (rods) vs GFP- retinal cell populations
| Name | Description | logFC | FDR |
|---|---|---|---|
| si:dkey-27i16.2 | si:dkey-27i16.2 [Source:ZFIN;Acc:ZDB-GENE-030131-9667] | −6.03866537 | 1.88E-38 |
| ptprc | protein tyrosine phosphatase, receptor type, C [Source:ZFIN;Acc:ZDB-GENE-050208-585] | −6.06476722 | 3.46E-31 |
| apoc1l | apolipoprotein C-I like [Source:ZFIN;Acc:ZDB-GENE-030131-1074] | −4.46320866 | 2.75E-30 |
| cd74a | CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1] | −4.67633439 | 1.65E-28 |
| bzw1b | basic leucine zipper and W2 domains 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2881] | −3.66358803 | 9.06E-28 |
| si:dkey-25o1.6 | si:dkey-25o1.6 [Source:ZFIN;Acc:ZDB-GENE-091204-276] | −5.26240739 | 3.27E-27 |
| si:ch211–260d11.1 | si:ch211–260d11.1 [Source:ZFIN;Acc:ZDB-GENE-091204-40] | −6.02459793 | 1.05E-26 |
| lgals3bpb | lectin, galactoside-binding, soluble, 3 binding protein b [Source:ZFIN;Acc:ZDB-GENE-040426-2262] | −5.09075533 | 1.25E-26 |
| coro1a | coronin, actin binding protein, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-9512] | −7.62303025 | 1.06E-25 |
| hbaa1 | hemoglobin alpha adult-1 [Source:ZFIN;Acc:ZDB-GENE-980526-79] | −9.74873113 | 1.70E-25 |
| si:dkey-25o1.5 | si:dkey-25o1.5 [Source:ZFIN;Acc:ZDB-GENE-091204-344] | −9.53659867 | 7.14E-23 |
| sla2 | Src-like-adaptor 2 [Source:ZFIN;Acc:ZDB-GENE-080204-98] | −9.56172956 | 2.35E-22 |
| inpp5d | inositol polyphosphate-5-phosphatase D [Source:ZFIN;Acc:ZDB-GENE-100922–30] | −4.44994274 | 1.17E-21 |
| mpeg1 | macrophage expressed 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7347] | −9.35334321 | 2.15E-21 |
| ZFP36 | ZFP36 ring finger protein [Source:HGNC Symbol;Acc:12,862] | −5.4525006 | 1.53E-20 |
| ankrd33ab | ankyrin repeat domain 33Ab [Source:ZFIN;Acc:ZDB-GENE-100729-1] | −3.13603996 | 1.97E-20 |
| pfn1 | profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002–33] | −4.86406116 | 2.72E-20 |
| grk7a | G-protein-coupled receptor kinase 7a [Source:ZFIN;Acc:ZDB-GENE-050824-1] | −2.77617205 | 5.07E-20 |
| rcv1 | recoverin [Source:ZFIN;Acc:ZDB-GENE-030131-7590] | −2.80718642 | 2.57E-19 |
| tagapa | T-cell activation RhoGTPase activating protein a [Source:ZFIN;Acc:ZDB-GENE-040426-1877] | −6.39333701 | 1.05E-18 |
| si:dkey-126 g1.9 | si:dkey-126 g1.9 [Source:ZFIN;Acc:ZDB-GENE-030131-9862] | −2.79689496 | 1.53E-18 |
| havcr1 | hepatitis A virus cellular receptor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-131] | −7.67482315 | 1.91E-18 |
| slc1a8b | solute carrier family 1 (glutamate transporter), member 8b [Source:ZFIN;Acc:ZDB-GENE-070912-552] | −2.5380374 | 3.55E-18 |
| csf1ra | colony stimulating factor 1 receptor, a [Source:ZFIN;Acc:ZDB-GENE-001205-1] | −4.24059459 | 1.94E-17 |
| si:ch211–250 g4.3 | si:ch211–250 g4.3 [Source:ZFIN;Acc:ZDB-GENE-060503-506] | −7.55964405 | 3.53E-17 |
| arpc1b | actin related protein 2/3 complex, subunit 1B [Source:ZFIN;Acc:ZDB-GENE-030131-7414] | −4.66326368 | 6.41E-17 |
| CT826376.1 | Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F690] | −2.34407255 | 7.14E-17 |
| pdcb | phosducin b [Source:ZFIN;Acc:ZDB-GENE-031023-2] | −2.4532108 | 9.01E-17 |
| opn1lw2 | opsin 1 (cone pigments), long-wave-sensitive, 2 [Source:ZFIN;Acc:ZDB-GENE-040718-141] | −2.76413479 | 5.15E-16 |
| ba1 | ba1 globin [Source:ZFIN;Acc:ZDB-GENE-990415-18] | −6.23069882 | 6.15E-16 |
| opn1mw3 | opsin 1 (cone pigments), medium-wave-sensitive, 3 [Source:ZFIN;Acc:ZDB-GENE-030728-6] | −2.56365947 | 9.40E-16 |
| hbaa1 | hemoglobin alpha adult-1 [Source:ZFIN;Acc:ZDB-GENE-980526-79] | −6.44638081 | 2.14E-15 |
| zgc:195,245 | zgc:195,245 [Source:ZFIN;Acc:ZDB-GENE-081022-200] | −2.62839443 | 2.47E-15 |
| arr3a | arrestin 3a, retinal (X-arrestin) [Source:ZFIN;Acc:ZDB-GENE-040718-102] | −3.02133496 | 2.47E-15 |
| zgc:100,919 | zgc:100,919 [Source:ZFIN;Acc:ZDB-GENE-040718-248] | −4.70079878 | 3.07E-15 |
| gc3 | guanylyl cyclase 3 [Source:ZFIN;Acc:ZDB-GENE-011128-9] | −2.32749631 | 4.00E-15 |
| ppp1r18 | protein phosphatase 1, regulatory subunit 18 [Source:ZFIN;Acc:ZDB-GENE-060503-350] | −2.29809174 | 5.42E-15 |
| CD68 | CD68 molecule [Source:HGNC Symbol;Acc:1693] | −3.83135448 | 5.42E-15 |
| il1b | interleukin 1, beta [Source:ZFIN;Acc:ZDB-GENE-040702-2] | −4.3585252 | 5.67E-15 |
| cplx4a | complexin 4a [Source:ZFIN;Acc:ZDB-GENE-060526-116] | −2.12559816 | 7.51E-15 |
| cnga3a | cyclic nucleotide gated channel alpha 3a [Source:ZFIN;Acc:ZDB-GENE-090611–2] | −2.2388126 | 1.69E-14 |
| ccr9a | chemokine (C-C motif) receptor 9a [Source:ZFIN;Acc:ZDB-GENE-060130-125] | −4.13641441 | 1.75E-14 |
| opn1lw1 | opsin 1 (cone pigments), long-wave-sensitive, 1 [Source:ZFIN;Acc:ZDB-GENE-990604-41] | −2.8443546 | 1.89E-14 |
| KEL | Kell blood group, metallo-endopeptidase [Source:HGNC Symbol;Acc:6308] | −8.54223593 | 2.27E-14 |
| si:ch1073-403i13.1 | si:ch1073-403i13.1 [Source:ZFIN;Acc:ZDB-GENE-100921–25] | −4.50874649 | 2.31E-14 |
| wasb | Wiskott-Aldrich syndrome (eczema-thrombocytopenia) b [Source:ZFIN;Acc:ZDB-GENE-030131-7098] | −5.26157912 | 2.52E-14 |
| SLC24A2 (1 of 2) | solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 [Source:HGNC Symbol;Acc:10,976] | −2.22076034 | 2.67E-14 |
| pbxip1b | pre-B-cell leukemia homeobox interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2032] | −2.27917445 | 3.27E-14 |
| CD53 | CD53 molecule [Source:HGNC Symbol;Acc:1686] | −5.72855472 | 3.28E-14 |
| slc25a25a | solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396] | −2.50025348 | 3.72E-14 |