Table 1. A table summing up the main features of different algorithms.

Feature	NetMiner	WGCNA	GGM	BC3NET	GLM	TM	ARACNE	VCNet	CCA	SpliceNet
Computational complexity	Middle	Low	Low	Middle	High	High	Low	High	High	High
Whole genome inference	Yes	Yes	Yes	Yes	Yes	Yes	Yes	No	No	No
Data level	Gene	Gene	Gene	Gene	Gene	Gene	Gene	Exon	Exon/Position/Allele	Exon
Sample size	Large-scale	Large-scale	Large-scale	Large-scale	Large-scale	Large-scale	Large-scale	Small-scale to middle-scale	Small-scale to middle-scale	Small-scale to middle-scale