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. 2017 Dec 28;52(3):656–678. doi: 10.3892/ijo.2017.4233

Table II.

PCR primers.

Gene Gene ID Description NCBI nucleotide reference Primer sequences (forward and reverse) Tm PCR product length name (bp)
ABL1 25 ABL proto-oncogene 1 NM_005157.5 5′-TCATATCAACCCGAGTGTCT-3′
5′-AACTTGTTCCTCATTTGCTG-3′
56°C
54°C
229
ANXA3 306 Annexin A3 NM_005139.2 5′-CGCAATCAGGTGGAGTCGAG-3′
5′-TCACTAGGGCCACCATGAGA-3′
61°C
60°C
467
ACTB 60 Actin beta NM_001101.4 5′-TCCCTGGAGAAGAGCTACGA-3′
5′-AGGAAGGAAGGCTGGAAGAG-3′
59°C
59°C
  98
CAT 847 Catalase NM_001752.3 5′-CTCCGGAACAACAGCCTTCT-3′
5′-GATGAGCGGGTTACACGGAT -3′
60°C
60°C
412
GAPDH 2597 Glyceraldehyde-3-phosphate dehydrogenase NM_002046.5 5′-CCGTCTAGAAAAACCTGCC-3′
5′-AGCCAAATTCGTTGTCATACC-3′
56°C
57°C
218
NPM1 4869 Nucleophosmin 1 NM_001037738.2 5′-GCGCATTGAACAGTCCTGGG -3′
5′-CCAGCCTGAAGAGGCATGGGT -3′
62°C
64°C
172
PGK1 5230 Phosphoglycerate kinase 1 NM_000291.3 5′-GGGAAAAGATGCTTCTGGGAA-3′
5′-TTGGAAAGTGAAGCTCGGAAA-3′
58°C
58°C
  72
PPIA 5478 Peptidylprolyl isomerase A NM_021130.4 5′-CTGGACCCAACACAAATGGT-3′
5′-GCCTTCTTTCACTTTGCCAAAC-3′
58°C
59°C
  98
S100A8 6279 S100 calcium binding protein A8 NM_001319196.1 5′-TGAAGAAATTGCTAGAGAC-3′
5′-CTTTATCACCAGAATGAGGA-3′
50°C
52°C
131
S100A9 6280 S100 calcium binding protein A9 NM_002965.3 5′-CCTGGACACAAATGCAGACAA-3′
5′-CGTCACCCTCGTGCATCTT-3′
59°C
60°C
101
STMN1 3925 Stathmin 1 NM_203401.1 5′-GCCCTCGGTCAAAAGAATCTG-3′
5′-TGCTTCAAGACCTCAGCTTCA-3′
59°C
60°C
139
WT1 7490 Wilms tumor 1 NM_000378.4 5′-ACAGGGTACGAGAGCGATAACCA-3′
5′-CACACGTCGCACATCCTGAAT-3′
63°C
61°C
105

The primer sequences of 3 reference genes (ACTB, PGK1 and PPIA) were from the study by Lossos et al (69). The STMN1 primers were from the study by Hussein et al (70). The WT1 primers were from the study by Kreuzer et al (71). The design of the remaining primers and melting temperature (Tm) calculation was supported by NCBI Primer Blast (www.ncbi.nlm.nih.gov/tools/primer-blast/).