Table II.
Gene | Gene ID | Description | NCBI nucleotide reference | Primer sequences (forward and reverse) | Tm | PCR product length name (bp) |
---|---|---|---|---|---|---|
ABL1 | 25 | ABL proto-oncogene 1 | NM_005157.5 | 5′-TCATATCAACCCGAGTGTCT-3′ 5′-AACTTGTTCCTCATTTGCTG-3′ |
56°C 54°C |
229 |
ANXA3 | 306 | Annexin A3 | NM_005139.2 | 5′-CGCAATCAGGTGGAGTCGAG-3′ 5′-TCACTAGGGCCACCATGAGA-3′ |
61°C 60°C |
467 |
ACTB | 60 | Actin beta | NM_001101.4 | 5′-TCCCTGGAGAAGAGCTACGA-3′ 5′-AGGAAGGAAGGCTGGAAGAG-3′ |
59°C 59°C |
98 |
CAT | 847 | Catalase | NM_001752.3 | 5′-CTCCGGAACAACAGCCTTCT-3′ 5′-GATGAGCGGGTTACACGGAT -3′ |
60°C 60°C |
412 |
GAPDH | 2597 | Glyceraldehyde-3-phosphate dehydrogenase | NM_002046.5 | 5′-CCGTCTAGAAAAACCTGCC-3′ 5′-AGCCAAATTCGTTGTCATACC-3′ |
56°C 57°C |
218 |
NPM1 | 4869 | Nucleophosmin 1 | NM_001037738.2 | 5′-GCGCATTGAACAGTCCTGGG -3′ 5′-CCAGCCTGAAGAGGCATGGGT -3′ |
62°C 64°C |
172 |
PGK1 | 5230 | Phosphoglycerate kinase 1 | NM_000291.3 | 5′-GGGAAAAGATGCTTCTGGGAA-3′ 5′-TTGGAAAGTGAAGCTCGGAAA-3′ |
58°C 58°C |
72 |
PPIA | 5478 | Peptidylprolyl isomerase A | NM_021130.4 | 5′-CTGGACCCAACACAAATGGT-3′ 5′-GCCTTCTTTCACTTTGCCAAAC-3′ |
58°C 59°C |
98 |
S100A8 | 6279 | S100 calcium binding protein A8 | NM_001319196.1 | 5′-TGAAGAAATTGCTAGAGAC-3′ 5′-CTTTATCACCAGAATGAGGA-3′ |
50°C 52°C |
131 |
S100A9 | 6280 | S100 calcium binding protein A9 | NM_002965.3 | 5′-CCTGGACACAAATGCAGACAA-3′ 5′-CGTCACCCTCGTGCATCTT-3′ |
59°C 60°C |
101 |
STMN1 | 3925 | Stathmin 1 | NM_203401.1 | 5′-GCCCTCGGTCAAAAGAATCTG-3′ 5′-TGCTTCAAGACCTCAGCTTCA-3′ |
59°C 60°C |
139 |
WT1 | 7490 | Wilms tumor 1 | NM_000378.4 | 5′-ACAGGGTACGAGAGCGATAACCA-3′ 5′-CACACGTCGCACATCCTGAAT-3′ |
63°C 61°C |
105 |
The primer sequences of 3 reference genes (ACTB, PGK1 and PPIA) were from the study by Lossos et al (69). The STMN1 primers were from the study by Hussein et al (70). The WT1 primers were from the study by Kreuzer et al (71). The design of the remaining primers and melting temperature (Tm) calculation was supported by NCBI Primer Blast (www.ncbi.nlm.nih.gov/tools/primer-blast/).