Table 3.
Differentially expressed genes (15 most up- and down-regulated in periodontal pocket) between periodontitis and laboratory culture in Treponema denticola.
| Genes | log2FC | log2CPM | FDR | Product |
|---|---|---|---|---|
| 2740075 | 8.578301 | 6.071104 | 4.99E-27 | Iron compound ABC transporter ATP-binding protein |
| 2740077 | 8.364144 | 8.753274 | 6.49E-40 | Iron compound ABC transporter periplasmic iron compound-binding protein |
| 2740076 | 7.592179 | 7.353986 | 4.21E-30 | Iron compound ABC transporter permease |
| 2741549 | 7.115278 | 8.253119 | 9.95E-35 | MATE family transporter |
| 2740073 | 6.892528 | 6.784015 | 1.36E-20 | Oxygen-independent coproporphyrinogen III oxidase |
| 2740845 | 6.749295 | 7.81299 | 5.75E-11 | ABC transporter permease |
| 2739036 | 6.659903 | 2.914318 | 1.69E-12 | ABC transporter ATP-binding protein |
| 2739143 | 6.592251 | 1.053299 | 1.65E-07 | ABC transporter permease |
| 2740800 | 6.471231 | 7.951346 | 8.73E-32 | ABC transporter ATP-binding protein/permease |
| 2740799 | 6.29813 | 8.534355 | 3.43E-31 | ABC transporter ATP-binding protein/permease |
| 2740388 | 6.102319 | 7.656629 | 1.43E-16 | ABC transporter ATP-binding protein/permease |
| 2740074 | 5.79486 | 3.974965 | 4.37E-13 | Flavodoxin |
| 2740386 | 5.79021 | 4.182447 | 1.06E-09 | ABC transporter ATP-binding protein/permease |
| 2740844 | 5.704174 | 8.845092 | 1.77E-17 | ABC transporter ATP-binding protein |
| 2740389 | 5.658901 | 6.992283 | 4.37E-13 | ABC transporter ATP-binding protein/permease |
| 2739225 | -12.3905 | 6.430921 | 4.07E-06 | funZ protein |
| 2739011 | -12.5252 | 6.550985 | 8.43E-07 | MarR family transcriptional regulator |
| 2740067 | -12.6029 | 6.620306 | 9.64E-07 | DNA-binding protein |
| 2741609 | -12.7715 | 6.770585 | 2.62E-07 | ABC transporter ATP-binding protein |
| 2740870 | -12.7833 | 6.781314 | 2.50E-06 | Serine/threonine protein phosphatase |
| 2741689 | -12.8611 | 6.850028 | 1.12E-05 | Amino acid permease |
| 2740070 | -12.991 | 6.966664 | 5.29E-07 | Phage integrase family site specific recombinase |
| 2739708 | -13.2838 | 7.228467 | 2.43E-07 | Group 1 glycosyl transferase |
| 2740626 | -13.3455 | 7.28336 | 1.03E-06 | Bacteriocin ABC transporter ATP-binding/permease |
| 2739585 | -13.4335 | 7.362577 | 7.53E-09 | Lipoprotein |
| 2740086 | -14.0697 | 7.936201 | 1.20E-07 | Lipoprotein |
| 2741521 | -14.2329 | 8.084806 | 2.80E-11 | Surface protein |
| 2739407 | -14.916 | 8.712038 | 5.04E-12 | Oligopeptide/dipeptide ABC transporter periplasmic peptide-binding protein |
| 2739558 | -15.3404 | 9.107236 | 1.35E-08 | M20/M25/M40 family peptidase |
| 2739010 | -16.2571 | 9.975078 | 2.39E-10 | Hemolysin |