Table 2.
DNA Sequences
Primer/fragment | Sequence |
---|---|
Not_FraxC | 5′-AGTTCAGCGGCCGCGCTCAGCTCCGTTTCGGTTTCACTTCCGGT-3′ |
Not_FraxR4 | 5′-CAAGTCGCGGCCGCCTTGTAGAAAGCGCCATTGGAGCCCCGCA-3′ |
Fmr1_CCG5 | 5′-AGCGTCTACTGTCTCGGCACTTGCCCGCCGCCGCCGCCG-3′ |
Fmr1_CGG5 | 5′-AGCGTCTACTGTCTCGGCACTTGCCGGCGGCGGCGGCGG-3′ |
FMR1 exon 1 (forward) | 5′-GAACAGCGTTGATCACGTGAC-3′ |
FMR1 exon 1 (reverse) | 5′-GTGAAACCGAAACGGAGCTGA-3′ |
GAPDH exon1 (forward) | 5′-TCGACAGTCAGCCGCATCT-3′ |
GAPDH intron1 (reverse) | 5′-CTAGCCTCCCGGGTTTCTCT-3′ |
Internal methylation control fragment | 1 GCTCAGCTCC GTTTCGGTTT CACTTCCGGT AGCACGTCGC GGGGCGCCGT 51 AACGGCGAAT CGAGGGCGCG CACCGCCGTG ACATCGGCGT CATTCGGTCG 101 CATCACGGTT GTCGCCGGTG CGCGGTCGGA AAAGCGGGCG CGAGGCAGCG 151 GCGACGGCGC GAGTGAATCT AACGGGCGAC AACGCGTTCG GCCTCGGAGT 201 GGCGGCCACG GGTATGCGGG GCTCCAATGG CGCTTTCTAC AAG |
Sequences in bold are not homologous to the FMR1 gene. The primer sequences are underlined, whereas the 2 HpaII sites within the amplicon are italicized.