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. 2018 Feb 6;9:104. doi: 10.3389/fpls.2018.00104

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Copyright © 2018 You, Yang, Peng, Xu and Wang.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Flowcharts of genotype calling for Affymetrix and Illumina platforms. (A) The flowchart of executing genotype calling mainly based on Best Practices Genotyping Workflow on the Affymetrix Axiom SNP array platform. (B) The flowchart of executing genotype calling based on Illumina Infinium SNP array platform. GenCall score: a quality metric calculated for each genotype (data point), and ranges from 0 to 1; 10% GenCall score: 10th percentile GenCall score for all samples.