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. 2018 Feb 7;9:138. doi: 10.3389/fmicb.2018.00138

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Copyright © 2018 Duchaud, Rochat, Habib, Barbier, Loux, Guérin, Dalsgaard, Madsen, Nilsen, Sundell, Wiklund, Strepparava, Wahli, Caburlotto, Manfrin, Wiens, Fujiwara-Nagata, Avendaño-Herrera, Bernardet and Nicolas.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Whole-genome MLST. Neighbor-Joining tree built on pairwise distance between AT-profiles. Distance counted as the fraction of allele types that differs between two strains. Isolate name, year, host fish, and country of sampling are reported. The following abbreviations are used for the fish names: RbT for rainbow trout, CoS for coho salmon, AtS for Atlantic salmon, and BrT for brown trout. STs and AT-profiles corresponding to the classical 7-genes MLST scheme are also shown. CC-ST10 is highlighted by a light gray box.