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. 2018 Feb 7;9:138. doi: 10.3389/fmicb.2018.00138

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Copyright © 2018 Duchaud, Rochat, Habib, Barbier, Loux, Guérin, Dalsgaard, Madsen, Nilsen, Sundell, Wiklund, Strepparava, Wahli, Caburlotto, Manfrin, Wiens, Fujiwara-Nagata, Avendaño-Herrera, Bernardet and Nicolas.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Plasmids found in our collection of isolates. (A) Physical maps of the 15 types of plasmids (pFP1 to pFP15) are ordered by length. Colors indicate the main different types of genes (see inset legend), pseudogenes, and unknown short genes are represented in white. Three types of rep genes have been distinguished based on the important divergence of amino-acid sequences. (B) Distribution of the 15 types of plasmids across the isolates. The Neighbor-Joining tree obtained on whole-genome MLST profiles is used here. n.a. stands for no data available. Asterisks (^*) indicate the representatives that served to illustrate the different types of plasmids.