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Intersection between top-1000 differentially interacting bins from each method. In our methods, P represents pooling replicates; S represents treating replicates separately.
| Method | diffHiC | HOMER | HDL (P) | HDG (P) | HDL (S) | HDG (S) |
|---|---|---|---|---|---|---|
| diffHiC | 1000 | 80 | 128 | 12 | 80 | 9 |
| HOMER | 80 | 1000 | 49 | 28 | 31 | 28 |
| HDL (P) | 128 | 49 | 1000 | 47 | 144 | 35 |
| HDG (P) | 12 | 28 | 47 | 1000 | 39 | 466 |
| HDL (S) | 80 | 31 | 144 | 39 | 1000 | 42 |
| HDG (S) | 9 | 28 | 35 | 466 | 42 | 10 |
