Table 2. Comparison of genotypes and allele frequencies of C224T polymorphism in populations of European descent and the Göttinger pediatric cohort.
Cohort | Genotype | Allele frequency | Difference to Göttinger cohort ( p -Value) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
n | CC | CT | TT | C | T | ||||||
ClinSeq a | 659 | 560 | 0.8498 | 94 | 0.1426 | 5 | 0.0076 | 0.9211 | 0.0789 | 0.72 | |
ESP b | 4,299 | 3,646 | 0.8481 | 609 | 0.1417 | 44 | 0.0102 | 0.9189 | 0.0811 | 0.81 | |
ExAc1 c | European (non-Finnish) | 33,022 | 27,783 | 0.8413 | 4993 | 0.1512 | 246 | 0.0075 | 0.9169 | 0.0831 | 0.91 |
ExAc2 c | European (Finnish) | 3,291 | 2,976 | 0.9043 | 308 | 0.0936 | 7 | 0.0021 | 0.9511 | 0.0489 | < 0.01 |
ExAc3 c | Total | 36,313 | 30,759 | 0.8471 | 5301 | 0.1460 | 253 | 0.0069 | 0.92 | 0.08 | 0.74 |
GÖ d | 189 | 159 | 0.8413 | 28 | 0.1481 | 2 | 0.0106 | 0.9153 | 0.0847 | – |
Note: Populations with European descent (adults). n = count of participants.
ClinSeq: A Large-Scale Medical Sequencing Clinical Research Pilot Study ( https://www.genome.gov/20519355/clinseq-a-largescale-medical-sequencing-clinical-research-pilot-study/ ).
ESP: NHLBI Exome Sequencing Project ( http://evs.gs.washington.edu/EVS/ ).
ExAC: Exome Aggregation Consortium ( http://exac.broadinstitute.org/ ).
GÖ: Göttinger pediatric cohort.