Table 1.
Summary of array data contained in MethCNA
| Cancer type | TCGA | GEO | ||
|---|---|---|---|---|
| Sample | Series | Sample | Series | |
| Acute myeloid leukemia | 0 | 0 | 88 | 3 |
| Adrenocortical carcinoma | 80 | 1 | 0 | 0 |
| Atypical teratoid rhabdoid tumor | 0 | 0 | 150 | 1 |
| Bladder urothelial carcinoma | 419 | 1 | 0 | 0 |
| Breast invasive carcinoma | 796 | 1 | 316 | 3 |
| Cervical cancer | 309 | 1 | 0 | 0 |
| Cholangiocarcinoma | 36 | 1 | 0 | 0 |
| Colon adenocarcinoma | 316 | 1 | 104 | 2 |
| Diffuse intrinsic pontine glioma | 0 | 0 | 25 | 1 |
| Esophageal carcinoma | 186 | 1 | 0 | 0 |
| Glioblastoma multiforme | 153 | 1 | 72 | 1 |
| Head and neck squamous cell carcinoma | 530 | 1 | 0 | 0 |
| Kidney Chromophobe | 65 | 1 | 0 | 0 |
| Kidney renal clear cell carcinoma | 325 | 1 | 46 | 1 |
| Kidney renal papillary cell carcinoma | 276 | 1 | 0 | 0 |
| Liver hepatocellular carcinoma | 380 | 1 | 0 | 0 |
| Lung adenocarcinoma | 475 | 1 | 164 | 1 |
| Lung squamous cell carcinoma | 370 | 1 | 0 | 0 |
| Medulloblastoma | 0 | 0 | 119 | 2 |
| Neuroblastoma | 0 | 0 | 32 | 1 |
| Oligodendroglioma | 0 | 0 | 46 | 1 |
| Ovarian adenocarcinoma | 10 | 1 | 345 | 3 |
| Pancreatic adenocarcinoma | 185 | 1 | 167 | 1 |
| Pheochromocytoma and Paraganglioma | 184 | 1 | 0 | 0 |
| Prostate adenocarcinoma | 503 | 1 | 20 | 3 |
| Rectum adenocarcinoma | 99 | 1 | 6 | 1 |
| Sarcoma | 265 | 1 | 0 | 0 |
| Schwannoma | 0 | 0 | 40 | 1 |
| Skin cutaneous melanoma | 473 | 1 | 160 | 2 |
| Small cell lung carcinoma | 0 | 0 | 11 | 1 |
| Squamous cell skin carcinoma | 0 | 0 | 7 | 1 |
| Stomach adenocarcinoma | 396 | 1 | 0 | 0 |
| Thymoma | 124 | 1 | 0 | 0 |
| Thyroid carcinoma | 515 | 1 | 0 | 0 |
| Uterine carcinosarcoma | 57 | 1 | 0 | 0 |
| Uterine corpus endometrial carcinoma | 439 | 1 | 0 | 0 |
| Uveal melanoma | 80 | 1 | 0 | 0 |
| Total | 8046 | 28 | 1918 | 30 |