Table 1.
Dataset Summary
| Pass QC | Fail QC | |
|---|---|---|
| Cells | 3,589 (89%) | 456 (11%) |
| Sample | ||
| BT_S1 | 489 | 11 |
| BT_S2 | 1,169 | 138 |
| BT_S4 | 1,542 | 267 |
| BT_S6 | 389 | 40 |
| Location | ||
| Tumor | 2343 | 212 |
| Periphery | 1,246 | 227 |
| Sequencing Statistics | ||
| Reads (median) | 1,706,000 | 1,019,000 |
| Uniquely mapped reads (median, %) | 75.81 | 81.93 |
| Multimapped reads (median, %) | 2.35 | 0.29 |
| Genes detected (median) | 2,129 | 33 |
Number of cells per sample, number of cells per anatomical location, and general sequencing statistics are summarized for all sequenced cells that passed or failed QC. Only cells that passed QC were further analyzed.