Table 1.
List of microRNAs with increased binding to Mecp2 in the MNase resistant S2 chromatin fraction relative to the S1 chromatin fraction and discovered with small RIP-seq. Chromatin fractions were isolated from mouse primary cortical neurons. FC, Fold change; CPM, count per million; adjusted P value, FDR. Samples ordered in sequence of highest to lowest P value.
| Name | logFC S2 relative to S1 |
logCPM S2 relative to S1 |
Adjusted P value S2 relative to S1 |
|---|---|---|---|
| ENSMUSG00000065616_Mir375 | 5.7236 | 1.2889 | 9.3219E-16 |
| ENSMUSG00000065445_Mir143 | 5.3202 | 5.7183 | 1.6413E-12 |
| ENSMUSG00000065601_Mir146 | 4.3887 | 4.5887 | 1.4796E-09 |
| ENSMUSG00000065529_Mir22 | 4.0697 | 5.1515 | 1.0101E-07 |
| ENSMUSG00000065526_Mir337 | 3.5443 | 3.1029 | 1.9034E-07 |
| ENSMUSG00000085148_Mir22hg | 3.9599 | 5.1649 | 1.9394E-06 |
| ENSMUSG00000065444_Mir27a | 3.8220 | 0.9588 | 2.6029E-06 |
| ENSMUSG00000065540_Mir126 | 5.3568 | 3.5255 | 2.1864E-05 |
| ENSMUSG00000077921_Mir872 | 3.0591 | 4.8706 | 2.4842E-05 |
| ENSMUSG00000065603_Mir218-1 | 4.7393 | 0.5784 | 2.4842E-05 |
| ENSMUSG00000093337_Mir5109 | 2.1246 | 9.0693 | 4.4918E-05 |
| ENSMUSG00000070102_Mir455 | 4.1022 | 1.9968 | 7.2821E-05 |
| ENSMUSG00000093026_mmu-mir-378a | 4.0000 | 4.6699 | 1.4986E-04 |
| ENSMUSG00000076361_Mir182 | 4.7561 | 3.0580 | 2.1953E-04 |
| ENSMUSG00000065565_Mir181a-1 | 3.9722 | 5.4701 | 2.2832E-04 |
| ENSMUSG00000070110_Mir504 | 4.9274 | 1.1584 | 2.3487E-04 |
| ENSMUSG00000065490_Mir30c-1 | 3.5235 | 0.9244 | 2.3487E-04 |
| ENSMUSG00000065515_Mir152 | 3.7306 | 3.7416 | 2.5227E-04 |
| ENSMUSG00000089357_Mir2137 | 4.3250 | 1.2561 | 3.1367E-04 |
| ENSMUSG00000093291_mmu-mir-299b | 3.9091 | 0.7569 | 3.2010E-04 |
| ENSMUSG00000076052_Mir541 | 3.2833 | 8.0734 | 3.2535E-04 |
| ENSMUSG00000065479_Mir125a | 2.9606 | 7.3353 | 4.0182E-04 |
| ENSMUSG00000065619_Mir183 | 4.3280 | 2.5586 | 4.7651E-04 |
| ENSMUSG00000092984_Mir5115 | 3.2621 | 4.9969 | 6.4777E-04 |
| ENSMUSG00000065493_Mir34a | 4.9099 | 1.0441 | 7.8736E-04 |
| ENSMUSG00000070109_Mir497 | 4.9292 | 1.0330 | 1.1072E-03 |
| ENSMUSG00000065574_Mir203 | 3.0769 | 4.4668 | 1.1278E-03 |
| ENSMUSG00000093108_Mir344f | 4.7679 | 1.2487 | 1.4456E-03 |
| ENSMUSG00000092876_mmu-mir-9-1 | 3.2319 | 1.0412 | 1.8314E-03 |
| ENSMUSG00000065505_Mir148a | 4.7333 | 8.6709 | 1.8516E-03 |
| ENSMUSG00000070129_Mir136 | 3.0353 | 4.2290 | 1.8866E-03 |
| ENSMUSG00000065589_Mir301 | 2.9921 | 2.2141 | 1.8969E-03 |
| ENSMUSG00000065530_Mir99a | 3.9546 | 11.4561 | 2.3855E-03 |
| ENSMUSG00000065590_Mir212 | 3.3449 | 2.3841 | 2.4216E-03 |
| ENSMUSG00000065583_Mir218-2 | 3.6369 | 3.9330 | 2.4216E-03 |
| ENSMUSG00000093224_mmu-mir-380 | 4.0628 | 3.8551 | 2.5789E-03 |
| ENSMUSG00000065434_Mir7-1 | 2.5356 | 3.3770 | 3.0706E-03 |
| ENSMUSG00000070076_Mir127 | 3.5064 | 8.9905 | 3.5340E-03 |
| ENSMUSG00000065429_Mir345 | 3.4412 | 4.1212 | 3.9509E-03 |
| ENSMUSG00000065532_Mir187 | 3.0074 | 2.6240 | 5.2249E-03 |
| ENSMUSG00000093046_Mir3081 | 3.5110 | 1.6448 | 5.3507E-03 |
| ENSMUSG00000092995_Mir16-1 | 2.6095 | 2.4160 | 5.3507E-03 |
| ENSMUSG00000065607_Mir331 | 3.6915 | 2.5022 | 5.3814E-03 |
| ENSMUSG00000088148_Mir1983 | 3.3683 | 2.8936 | 8.2724E-03 |
| ENSMUSG00000065538_Mir153 | 2.4791 | 0.8858 | 9.6861E-03 |
| ENSMUSG00000080331_Mir1298 | 4.5784 | 6.8219 | 1.0597E-02 |
| ENSMUSG00000065494_Mir28 | 3.9165 | 3.6876 | 1.1353E-02 |
| ENSMUSG00000065579_Mir425 | 4.7262 | 2.5114 | 1.1776E-02 |
| ENSMUSG00000065415_Mir217 | 4.1240 | 0.8310 | 1.2468E-02 |
| ENSMUSG00000092915_mmu-mir-191 | 3.0043 | 7.3223 | 1.2571E-02 |
| ENSMUSG00000065472_Mir125b-2 | 3.1532 | 4.8656 | 1.3091E-02 |
| ENSMUSG00000065409_Mir30e | 2.9034 | 6.9804 | 1.3867E-02 |
| ENSMUSG00000070101_Mir341 | 3.5452 | 3.5018 | 1.4092E-02 |
| ENSMUSG00000065483_Mir181c | 3.1394 | 4.6644 | 1.4272E-02 |
| ENSMUSG00000070074_Mir484 | 2.7291 | 4.2684 | 1.4808E-02 |
| ENSMUSG00000065410_Mir298 | 3.0132 | 6.2660 | 1.5344E-02 |
| ENSMUSG00000065433_Mir370 | 3.6509 | 8.0840 | 1.5386E-02 |
| ENSMUSG00000065406_Mirlet7i | 3.1816 | 11.9423 | 1.7820E-02 |
| ENSMUSG00000076338_Mir181d | 3.0143 | 7.8515 | 1.8980E-02 |
| ENSMUSG00000065609_Mir7-2 | 4.1393 | 1.3322 | 1.9095E-02 |
| ENSMUSG00000065560_Mir148b | 3.6616 | 6.5430 | 2.5005E-02 |
| ENSMUSG00000093238_Mir9-3 | 4.3474 | 2.6964 | 2.7670E-02 |
| ENSMUSG00000065567_Mir30c-2 | 3.7779 | 4.4308 | 2.8376E-02 |
| ENSMUSG00000065423_Mir181a-2 | 3.5691 | 4.5353 | 2.8376E-02 |
| ENSMUSG00000089726_Mir17hg | 3.2364 | 9.4175 | 2.8471E-02 |
| ENSMUSG00000065426_Mir134 | 3.6948 | 4.7557 | 3.2208E-02 |
| ENSMUSG00000065428_Mir382 | 3.1401 | 6.6342 | 3.4257E-02 |
| ENSMUSG00000065577_Mir329 | 4.0540 | 2.5779 | 3.4371E-02 |
| ENSMUSG00000093011_Mir100 | 4.1421 | 11.2520 | 3.4925E-02 |
| ENSMUSG00000072900_Mir540 | 3.5130 | 1.0657 | 3.4925E-02 |
| ENSMUSG00000070080_Mir431 | 3.1441 | 3.8900 | 3.6217E-02 |
| ENSMUSG00000070100_Mir362 | 2.7667 | 2.1171 | 3.6707E-02 |
| ENSMUSG00000065570_Mir412 | 3.5721 | 1.1110 | 3.7874E-02 |
| ENSMUSG00000076140_Mir542 | 3.5096 | 2.1533 | 4.2872E-02 |
| ENSMUSG00000065536_Mir98 | 2.7844 | 5.0088 | 4.3073E-02 |
| ENSMUSG00000080441_Mir1249 | 2.4492 | 1.0397 | 4.4226E-02 |
| ENSMUSG00000070139_Mir532 | 2.8454 | 7.5266 | 4.6602E-02 |
| ENSMUSG00000070130_Mir328 | 3.2948 | 4.8399 | 4.6602E-02 |
| ENSMUSG00000065613_Mir92-2 | 4.1678 | 2.0651 | 4.6602E-02 |
| ENSMUSG00000065551_Mir210 | 3.0160 | 3.1104 | 4.6602E-02 |
| ENSMUSG00000065542_Mir224 | 3.7459 | 1.8243 | 4.6602E-02 |
| ENSMUSG00000065524_Mir135a-2 | 3.1806 | 1.8864 | 4.6602E-02 |
| ENSMUSG00000065450_Mir448 | 3.7226 | 2.0543 | 4.6602E-02 |
| ENSMUSG00000065431_Mir186 | 2.5933 | 4.4717 | 4.6602E-02 |
| ENSMUSG00000080669_Mir1224 | 3.5073 | 1.7346 | 4.8296E-02 |
| ENSMUSG00000092988_Mir3093 | 2.4630 | 1.2308 | 4.8368E-02 |
| ENSMUSG00000065471_Mir222 | 4.3033 | 3.1861 | 4.8368E-02 |