Table 2. Number of differentially expressed genes (false discovery rate < 0.05) in different pairwise comparisons of treatments in the Ochromonas sp. strain CCMP1393 experiment.
| Effect of light | Effect of HKB | |||||
|---|---|---|---|---|---|---|
| Dark+HKB vs. Light+HKB | Light+depleted HKB vs. Light+HKB | Light without HKB vs. Light+HKB | ||||
| Upregulated in Dark+HKB | Upregulated in Light+HKB | Upregulated in Light+depleted HKB | Upregulated in Light+HKB | Upregulated in Light without HKB | Upregulated in Light+HKB | |
|
Total genes (19,692 genes) |
3,902 | 4,421 | 4,398 | 4,365 | 5,654 | 5,914 |
| Photosynthesis-related | ||||||
| Antenna proteins KO00196 (10 genes) |
2 | 4 | 2 | 6 | 3 | 5 |
| Carotenoid biosynthesis KO00906 (8 genes) |
3 | 1 | 2 | 3 | 2 | 4 |
| Photosynthesis KO00195 (17 genes) |
2 | 8 | 2 | 11 | 3 | 10 |
|
Tetrapyrrole synthesis (43 genes) |
10 | 14 | 5 | 23 | 4 | 29 |
| Carbon metabolism | ||||||
| PPP (14 genes) | 2 | 10 | 2 | 9 | 3 | 8 |
| Calvin cycle (7 genes | 2 | 3 | 0 | 5 | 0 | 5 |
| Glycolysis (29 genes) | 9 | 12 | 7 | 11 | 8 | 12 |
| PEP to TCA (25 genes) | 2 | 20 | 16 | 1 | 18 | 1 |
| TCA cycle (32 genes) | 2 | 23 | 6 | 14 | 6 | 17 |
|
Nitrogen metabolism (18 genes) |
6 | 3 | 4 | 9 | 6 | 9 |