Table 2.
Conserved miRNAs identified from flower, leaf, bulblet and bulb libraries of L. lancifolium.
| Family | miRNA | Number of precursor sequence | Sequence (5′-3′) | Length (nt) | Clean reads | |||
|---|---|---|---|---|---|---|---|---|
| Bulblet | Bulb | Flower | Leaf | |||||
| MIR156 | LL-miR156a | c45184.graph_c0 | ugacagaagagagugagcac | 20 | 263 | 29 | 32 | 2 |
| c51027_g1 | ||||||||
| c103364_g2 | ||||||||
| c205656_g1 | ||||||||
| LL-miR156i | c45184.graph_c0 | ugacagaaagaguagugagca | 21 | 8 | 1 | 2 | 1 | |
| MIR159 | LL-miR159a | CL2574.Contig1_All | uggauugaagggagcucuaca | 21 | 11 | 13 | 2 | 4 |
| CL2574.Contig4_All | ||||||||
| LL-miR159b | c117583_g1 | uuuggauugaagggagcucua | 21 | 1446 | 969 | 671 | 379 | |
| c44060.graph_c0 | ||||||||
| LL-miR319a | c120927_g2 | uuggacugaagggagcucccu | 21 | 1 | 2 | 0 | 0 | |
| MIR160 | LL-miR160a | c19797.graph_c0 | ugccuggcucccuguaugcca | 21 | 3 | 1 | 8 | 3 |
| c50045_g1 | ||||||||
| LL-miR160f | c99102_g1 | cugccuggcucccugaaugcc | 21 | 1 | 18 | 2 | 3 | |
| MIR162 | LL-miR162a | Unigene26825_All | ucgauaaaccucugcauccgg | 21 | 17 | 52 | 50 | 4 |
| MIR164 | LL-miR164a | c96196_g1 | uggagaagcagggcacgugca | 21 | 11 | 0 | 18 | 0 |
| c30311.graph_c0 | ||||||||
| MIR166 | LL-miR166f | Unigene32510_All | ucucggaccaggcuucauucc | 21 | 49 | 40 | 366 | 6 |
| c39808.graph_c0 | ||||||||
| c121414_g2 | ||||||||
| LL-miR166g | c106540_g1 | ucggaccaggcuucauuccuc | 21 | 369 | 122 | 259 | 92 | |
| MIR167 | LL-miR167a | c105919_g1 | ugaagcugccagcaugaucuga | 21 | 7 | 37 | 1923 | 132 |
| MIR168 | LL-miR168a | c71740.graph_c0 | ucgcuuggugcaggucgggaa | 21 | 40 | 137 | 6 | 4 |
| c24174.graph_c0 | ||||||||
| c105404_g1 | ||||||||
| MIR172 | LL-miR172a | c79803.graph_c0 | agaaucuugaugaugcugcaa | 21 | 0 | 0 | 24 | 0 |
| MIR390 | LL-miR390a | c7928.graph_c0 | aagcucaggagggauagcgcc | 21 | 4 | 0 | 16 | 0 |
| MIR395 | LL-miR395a | c12817.graph_c0 | ugaaguguuugggggaacucc | 21 | 208 | 1183 | 105 | 140 |
| LL-miR395k | c5100.graph_c0 | ugaagcguuugggggaacucc | 21 | 0 | 2 | 1 | 1 | |
| MIR396 | LL-miR396a | c103053_g1 | uuccacagcuuucuugaacug | 21 | 33 | 123 | 19 | 15 |
| Unigene25901_All | ||||||||
| LL-miR396f | c30849_g1 | uuccacggcuuucuugaacua | 21 | 38 | 78 | 81 | 5 | |
| MIR398 | LL-miR398b | c221661_g1 | uguguucucaggucaccccug | 21 | 55 | 70 | 11 | 71 |
| c35683_g1 | ||||||||
| MIR399 | LL-miR399a | c191701_g1 | ugccaaaggagacuugcccug | 21 | 2 | 0 | 3 | 5 |
| MIR408 | LL-miR408b | c121837_g2 | ugcacugccucuucccuggcu | 21 | 7 | 0 | 2 | 14 |
| MIR845 | LL-miR845 | c54746.graph_c0 | cgcucugauaccacuuguugg | 21 | 1 | 8 | 1 | 0 |
| MIR2118 | LL-miR2118e | c28582_g1 | uucccaaugccucucaugccaa | 22 | 2 | 0 | 10 | 1 |
| LL-miR2118a | Unigene6944_All | uugccgauaccacccauaccga | 22 | 4 | 6 | 3 | 0 | |