Table 3.
Novel miRNAs identified from flower, leaf, bulblet and bulb libraries of L. lancifolium.
| miRNA | Number of precursor sequence | Sequence (5′-3′) | Length (nt) | Clean reads | |||
|---|---|---|---|---|---|---|---|
| Bulblet | Bulb | Flower | Leaf | ||||
| LL-miR01 | c33038.graph_c0 | uaguaaguuugcagagcagag | 21 | 0 | 0 | 53 | 0 |
| LL-miR02 | c1069.graph_c1 | cuugugcuucuggacugcucc | 21 | 0 | 56 | 0 | 0 |
| LL-miR03 | c15590.graph_c0 | aagguauagagucagacacuu | 20 | 0 | 0 | 9 | 0 |
| LL-miR04 | c25608.graph_c0 | agacgaucgcaccaaacuggcuau | 24 | 13 | 67 | 1 | 0 |
| LL-miR05 | c28639.graph_c0 | uuuucuaugucacucaauccaa | 22 | 0 | 2 | 3 | 0 |
| LL-miR06 | c30876.graph_c0 | aguaaguugagaagaguaggagaa | 24 | 3 | 3 | 0 | 1 |
| LL-miR07 | c31471.graph_c0 | uucacugccaccauccgccugu | 22 | 1 | 9 | 28 | 1 |
| LL-miR08 | c35378.graph_c0 | cgguugcuuagcuuguacucu | 21 | 0 | 12 | 1 | 0 |
| LL-miR09 | c36638.graph_c0 | ugcaccuccuccuccuuuucu | 21 | 56 | 13 | 33 | 244 |
| LL-miR10 | CL3742.Contig2_All | gguuugaugaaucugagcauc | 21 | 14 | 19 | 55 | 18 |
| LL-miR11 | c53683.graph_c0 | uuacgugucccuuaaucugacggg | 24 | 0 | 3 | 0 | 1 |
| LL-miR12 | c56352_g1 | gcucggguuaacggggaagug | 21 | 9 | 56 | 0 | 0 |
| LL-miR13 | c59256_g1 | uaugaaguuauauagguuguccgg | 24 | 1 | 6 | 0 | 0 |
| LL-miR14 | c79455.graph_c0 | uuuacugccaccauccgccugc | 22 | 3 | 12 | 5 | 0 |
| LL-miR15 | c94000_g1 | aagguaagagaaucaacaagaggu | 24 | 0 | 8 | 0 | 0 |
| LL-miR16 | c96112_g1 | uaggcaacaaauuagagucucu | 22 | 8 | 8 | 33 | 50 |
| LL-miR17 | c99691_g1 | uuuguauggucuguugaaauu | 21 | 4 | 0 | 0 | 0 |
| LL-miR18 | c109150_g1 | caggcggcgaggauggggaug | 21 | 2 | 5 | 0 | 0 |
| LL-miR19 | c109175_g1 | uugcuuagcuuguacucucgc | 21 | 1 | 4 | 4 | 0 |
| LL-miR20 | c110752_g2 | ugaaaauguagcacuagcacc | 21 | 1 | 7 | 0 | 0 |
| LL-miR21 | c111855_g1 | uugagaguagagagccaggug | 21 | 0 | 12 | 1 | 4 |
| LL-miR22 | c114504_g1 | aaaugaugaaucugagccuc | 20 | 8 | 0 | 10 | 6 |
| LL-miR23 | c114692_g4 | uagaggcgaugaugaugaaau | 21 | 44 | 795 | 75 | 119 |
| LL-miR24 | c117497_g1 | ugaagacuuggcaaccgacauc | 22 | 4 | 20 | 2 | 0 |
| LL-miR25 | c117720_g1 | ucugcccugauaugagcuccag | 22 | 36 | 0 | 137 | 0 |
| LL-miR26 | c117786_g3 | ucugaauagcaaacccaauuc | 21 | 3 | 5 | 1 | 0 |
| LL-miR27 | c166092_g1 | aaacgaucgauaaaccucugc | 21 | 0 | 4 | 2 | 0 |
| LL-miR28 | c48903.graph_c0 | aaugagaagacuagugacaagauu | 24 | 4 | 73 | 0 | 0 |
| LL-miR29 | CL711.Contig2_All | uucccuucggcugcaaauagc | 21 | 77 | 25 | 47 | 33 |
| LL-miR30 | CL719.Contig1_All | uagaggcgaugaugaugaaau | 21 | 0 | 2 | 0 | 1 |
| LL-miR31 | CL1297.Contig2_All | aucuuuggccuggagauagagg | 22 | 0 | 3 | 0 | 0 |
| LL-miR32 | c71927_g1 | ugugccaugcugugugcgucc | 21 | 2 | 30 | 2 | 0 |
| LL-miR33 | CL4047.Contig1_All | ugccgggcuaagauacaaggau | 22 | 1 | 0 | 2 | 1 |
| LL-miR34 | HM045458.1 | ucuauaugacucucggcaacgg | 22 | 0 | 1 | 25 | 2 |
| LL-miR35 | JZ391002 | uccaaagucagugaggggagc | 21 | 0 | 9 | 0 | 0 |
| LL-miR36 | Unigene13110_All | uucgagugacauauggaaacu | 21 | 1 | 3 | 0 | 0 |
| LL-miR37 | Unigene18554_All | ucaaucuuuggccuggagauagag | 24 | 2 | 10 | 4 | 0 |
| LL-miR38 | c68386.graph_c0 | ugggucuccucucauuccaug | 21 | 9 | 13 | 0 | 0 |
| LL-miR39 | Unigene25443_All | uucgagugacauauggaaacu | 21 | 1 | 3 | 0 | 0 |
| LL-miR40 | c51021.graph_c0 | ucaaagacgaaucugagcaua | 21 | 2 | 6 | 0 | 0 |
| LL-miR41 | c56504.graph_c0 | ucguaucugugguuugcuccu | 21 | 0 | 1 | 2 | 0 |
| LL-miR42 | c59249.graph_c0 | ugcaguuugguuuguggugug | 21 | 1 | 3 | 0 | 1 |
| LL-miR43 | GW589960 | cugucgagcuuccauacuggc | 21 | 0 | 3 | 0 | 0 |
| LL-miR44 | JZ391211 | uggaucuugaaccaaguguuc | 21 | 0 | 2 | 10 | 0 |