Table 2.
Gene content of the A. compactum cp genome
| Gene category | Gene group | Gene name |
|---|---|---|
| Self-replication | rRNA genes | rrn16c, rrn23c, rrn5c, rrn4.5c |
| tRNA genes | trnH-GUGc, trnK-UUUa, trnQ-UUG, trnS-GCU, trnC-GCA, trnD-GUC, trnY-GUA, trnE-UUC, trnR-UCU, trnT-GGU, trnS-UGA, trnG-GCCc, trnfM-CAU, trnS-GGA, trnT-UGU, trnL-UAAa, trnF-GAA, trnV-UACa, trnW-CCA, trnP-UGG, trnI-CAUc, trnL-CAAc, trnV-GACc, trnI-GAUa, c, trnA-UGCa, c, trnR-ACGc, trnN-GUUc, trnL-UAG, trnM-CAU | |
| Small subunit of ribosome | rps4, rps14, rps18, rps2, rps12b, c, rps11, rps8, rps3, rps19, rps7c, rps15, rps16a | |
| Large subunit of ribosome | rpl33, rpl20, rpl36, rpl14, rpl16a, rpl22, rpl2a, c, rpl23c, rpl32 | |
| DNA dependent RNA polymerase | rpoB, rpoC1a, rpoC2, rpoA | |
| Translational initiation factor | infA | |
| Genes for photosynthesis | Subunits of NADH dehydrogenase | ndhAa, ndhBa, c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK |
| Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ, ycf3b, ycf4 | |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of cytochrome b/f complex | petN, petA, petL, petG, petBa, petD | |
| Subunits of ATP synthase | atpI, atpH, atpFa, atpA, atpE, atpB | |
| Large subunit of rubisco | rbcL | |
| Genes of unknown function | Open reading frames (ORF, ycf) | ycf1, ycf15c, ycf2c |
| Pseudogenes | ycf1 |
aGene with one intron
bGene with two introns
cGene with two copies