Table 3.

Codon-anticodon recognition patterns and codon usage in the A. compactum cp genome

Amino acid	Codon	No.	RSCU	tRNA	Amino acid	Codon	Count	RSCU	tRNA
Phe	UUU	971	1.31		Tyr	UAU	811	1.57
Phe	UUC	516	0.69	trnF-GAA	Tyr	UAC	221	0.43	trnY-GUA
Leu	UUA	892	1.96	trnL-UAA	Stop	UAA	48	1.66
Leu	UUG	559	1.23	trnL-CAA	Stop	UAG	22	0.76
Leu	CUU	567	1.25		His	CAU	519	1.6
Leu	CUC	181	0.4		His	CAC	129	0.4	trnH-GUG
Leu	CUA	381	0.84	trnL-UAG	Gln	CAA	706	1.54	trnQ-UUG
Leu	CUG	151	0.33		Gln	CAG	210	0.46
Ile	AUU	1146	1.47		Asn	AAU	989	1.55
Ile	AUC	426	0.55	trnI-GAU	Asn	AAC	289	0.45	trnN-GUU
Ile	AUA	763	0.98	trnI-CAU	Lys	AAA	1114	1.49	trnK-UUU
Met	AUG	614	1	trn(f)M-CAU	Lys	AAG	383	0.51
Val	GUU	521	1.45		Asp	GAU	875	1.64
Val	GUC	159	0.44	trnV-GAC	Asp	GAC	192	0.36	trnD-GUC
Val	GUA	559	1.56	trnV-UAC	Glu	GAA	1125	1.53	trnE-UUC
Val	GUG	194	0.54		Glu	GAG	350	0.47
Ser	UCU	598	1.74		Cys	UGU	232	1.56
Ser	UCC	337	0.98	trnS-GGA	Cys	UGC	66	0.44	trnC-GCA
Ser	UCA	412	1.2	trnS-UGA	Stop	UGA	17	0.59
Ser	UCG	182	0.53		Trp	UGG	452	1	trnW-CCA
Pro	CCU	442	1.62		Arg	CGU	365	1.37	trnR-ACG
Pro	CCC	202	0.74		Arg	CGC	86	0.32
Pro	CCA	325	1.19	trnP-UGG	Arg	CGA	342	1.29
Pro	CCG	120	0.44		Arg	CGG	113	0.43
Thr	ACU	537	1.57		Arg	AGA	519	1.95	trnR-UCU
Thr	ACC	237	0.7	trnT-GGU	Arg	AGG	168	0.63
Thr	ACA	433	1.27	trnT-UGU	Ser	AGU	430	1.25
Thr	ACG	157	0.46		Ser	AGC	102	0.3	trnS-GCU
Ala	GCU	626	1.82		Gly	GGU	604	1.39
Ala	GCC	203	0.59		Gly	GGC	141	0.33	trnG-GCC
Ala	GCA	434	1.26	trnA-UGC	Gly	GGA	714	1.65
Ala	GCG	112	0.33		Gly	GGG	276	0.64

RSCU relative synonymous codon usage