Table 4.

Simple sequence repeats in the A. compactum cp genome

cpSSR ID	Repeat motif	Length (bp)	Start	End	Region	Annotation
1	(T)10	10	3975	3984	LSC	trnK-UUU
2	(A)10	10	4328	4337	LSC
3	(TA)6	12	4900	4911	LSC
4	(A)10	10	5287	5296	LSC	rps16 intron
5	(A)11	11	6253	6263	LSC
6	(TA)6	12	6609	6620	LSC
7	(A)10	10	7204	7213	LSC
8	(AT)6	12	7521	7532	LSC
9	(A)10	10	7700	7709	LSC
10	(T)12	12	8633	8644	LSC
11	(A)13	13	14,885	14,897	LSC
12	(T)10	10	17,474	17,483	LSC
13	(A)10	10	19,831	19,840	LSC	rpoC2
14	(T)11	11	24,121	24,131	LSC	rpoC1 intron
15	(A)10	10	28,802	28,811	LSC
16	(A)15	15	29,013	29,027	LSC
17	(A)11	11	30,868	30,878	LSC
18	(T)10	10	35,129	35,138	LSC
19	(TA)7	14	38,632	38,645	LSC
20	(A)12	12	39,292	39,303	LSC
21	(A)12	12	47,481	47,492	LSC
22	(T)10	10	48,986	48,995	LSC
23	(A)10	10	50,236	50,245	LSC
24	(AT)7	14	50,395	50,408	LSC
25	(T)10	10	51,829	51,838	LSC
26	(T)11	11	52,709	52,719	LSC
27	(ATA)5	15	54,345	54,359	LSC
28	(A)11	11	54,562	54,572	LSC
29	(T)10	10	58,778	58,787	LSC
30	(T)11	11	59,269	59,279	LSC
31	(A)12	12	60,919	60,930	LSC
32	(T)10	10	61,621	61,630	LSC
33	(AT)6	12	63,489	63,500	LSC
34	(A)12	12	68,715	68,726	LSC
35	(AT)10	20	69,266	69,285	LSC
36	(T)10	10	70,716	70,725	LSC
37	(A)10	10	72,600	72,609	LSC	rps18
38	(TA)7	14	74,094	74,107	LSC	rps12 intron
39	(A)10	10	74,569	74,578	LSC	clpP intron
40	(T)11	11	74,845	74,855	LSC	clpP intron
41	(T)10	10	75,108	75,117	LSC	clpP intron
42	(T)10	10	75,572	75,581	LSC	clpP intron
43	(T)10	10	75,831	75,840	LSC	clpP intron
44	(A)10	10	79,177	79,186	LSC
45	(AT)6	12	79,751	79,762	LSC	petB intron
46	(T)10	10	86,407	86,416	LSC	rpl16 intron
47	(T)11	11	88,970	88,980	IRa
48	(T)10	10	116,573	116,582	IRa	ycf1
49	(A)11	11	120,872	120,882	SSC
50	(T)11	11	121,055	121,065	SSC
51	(A)11	11	128,865	128,875	SSC	ndhA intron
52	(T)10	10	129,188	129,197	SSC	ndhA intron
53	(AT)6	12	131,778	131,789	SSC
54	(T)11	11	133,103	133,113	SSC
55	(T)12	12	133,236	133,247	SSC
56	(T)11	11	133,374	133,384	SSC	ycf1
57	(A)10	10	135,507	135,516	IRb	ycf1
58	(A)11	11	163,109	163,119	IRb