Table 5.

Long repeat sequences in A. compactum cp genome

ID	Repeat start 1	Type	Size (bp)	Repeat start 2	Mismatch (bp)	E value	Gene	Region
1	3990	P	34	3996	− 3	4.12E−06	trnK-UUU (intron)	LSC
2	8768	P	31	48,057	− 3	1.98E−04	IGS; trnS-GGA	LSC
3	10,522	F	30	39,347	− 3	7.15E−04	trnG-GCC (intron)	LSC
4	31,322	P	32	31,352	− 3	5.46E−05	IGS	LSC
5	32,991	F	30	33,020	− 3	7.15E−04	IGS	LSC
6	39,660	P	32	39,701	0	4.08E−10	IGS	LSC
7	41,551	F	58	43,775	− 3	7.54E−20	psaB; psaA	LSC
8	41,595	F	37	43,819	− 2	2.39E−09	psaB; psaA	LSC
9	63,481	P	31	126,101	− 3	1.98E−04	IGS	LSC; SSC
10	63,481	F	31	126,106	− 3	1.98E−04	IGS	LSC; SSC
11	63,487	F	32	69,264	− 3	5.46E−05	IGS	LSC
12	67,809	P	31	67,864	− 2	6.83E−06	IGS	LSC
13	71,632	F	30	71,659	0	6.53E−09	IGS	LSC
14	72,281	F	42	72,302	− 3	1.21E−10	rps18	LSC
15	91,249	F	46	91,299	− 1	2.10E−16	trnI-CAU; IGS	IRa
16	91,249	P	46	160,743	− 1	2.10E−16	trnI-CAU; IGS	IRa; IRb
17	91,299	P	46	160,793	− 1	2.10E−16	IGS	IRa; IRb
18	93,917	F	30	93,938	− 3	7.15E−04	ycf2	IRa
19	93,917	P	30	158,120	− 3	7.15E−04	ycf2	IRa; IRb
20	93,938	P	30	158,141	− 3	7.15E−04	ycf2	IRa; IRb
21	121,695	P	30	121,723	− 3	7.15E−04	IGS	SSC
22	158,122	F	30	158,143	− 3	7.15E−04	ycf2	IRb
23	160,743	F	46	160,793	− 1	2.10E−16	IGS	IRb
24	160,762	F	30	160,812	− 3	7.15E−04	IGS	IRb

F forward, P palindromic, IGS intergenic space