Table 1.
Information of the top ten Up-CNV and the top 10 Dn-CNV genes.
| GeneID | log2FCa | p-Value | padjb | Chr | Start | End | Descriptionc |
|---|---|---|---|---|---|---|---|
| GRMZM2G083246 | 1.32 | 4.05E-09 | 2.54E-05 | 10 | 3643040 | 3645180 | LRR and NB-ARC domains containing disease resistance protein (rp1) |
| GRMZM2G026176 | 1.28 | 1.51E-09 | 1.42E-05 | 1 | 257112452 | 257127180 | Unknown |
| GRMZM2G363377 | 1.25 | 5.04E-11 | 9.48E-07 | 2 | 184717427 | 184745555 | Sec14p-like phosphatidylinositol transfer family protein |
| GRMZM2G169013 | 1.25 | 2.08E-08 | 1.12E-04 | 2 | 7859326 | 7861362 | Unknown |
| GRMZM2G702514 | 1.19 | 7.19E-12 | 2.70E-07 | 10 | 136325395 | 136339339 | Flavanone 3-hydroxylase |
| GRMZM2G357081 | 1.19 | 1.21E-09 | 1.42E-05 | 1 | 257033199 | 257043603 | Shaggy-like kinase 13 |
| GRMZM2G349565 | 1.17 | 6.10E-07 | 1.76E-03 | 10 | 3764373 | 3766967 | LRR and NB-ARC domains containing disease resistance protein (rp1) |
| GRMZM2G009770 | 1.12 | 9.94E-07 | 2.44E-03 | 9 | 151759076 | 151762771 | Leucine-rich repeat protein kinase family protein |
| GRMZM2G127619 | 1.08 | 1.16E-06 | 2.57E-03 | 6 | 159004500 | 159005754 | Unknown |
| GRMZM2G701441 | 1.08 | 2.77E-09 | 2.08E-05 | 3 | 38609811 | 38632417 | Unknown |
| GRMZM2G086935 | −0.94 | 3.38E-05 | 2.70E-02 | 7 | 71388331 | 71391082 | Unknown |
| GRMZM2G106165 | −0.95 | 2.06E-05 | 1.94E-02 | 4 | 50720961 | 50724861 | Serine-type carboxypeptidase |
| GRMZM2G049027 | −0.96 | 5.95E-05 | 3.82E-02 | 6 | 91353470 | 91355242 | Cleavage and polyadenylation specificity factor 30 |
| GRMZM2G575323 | −0.96 | 4.89E-05 | 3.47E-02 | 1 | 126269847 | 126270723 | Unknown |
| GRMZM2G164672 | −0.97 | 3.74E-05 | 2.87E-02 | 1 | 174565242 | 174567097 | Unknown |
| GRMZM5G829946 | −0.98 | 2.30E-05 | 2.06E-02 | 2 | 66708324 | 66712872 | PLC-like phosphodiesterases superfamily protein |
| GRMZM2G166695 | −1.08 | 6.98E-08 | 2.92E-04 | 4 | 57590015 | 57595523 | Remorin family protein |
| GRMZM2G009624 | −1.09 | 1.04E-06 | 2.44E-03 | 1 | 123774374 | 123777663 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| GRMZM2G320305 | −1.15 | 8.25E-08 | 3.10E-04 | 10 | 2690434 | 2694516 | Ferredoxin-NADP(+)-oxidoreductase 2 |
| GRMZM2G014323 | −1.22 | 3.94E-08 | 1.85E-04 | 1 | 37667524 | 37685753 | Cell division control 2 |
a
Log2-fold change in read depth between R and S pools.
b
Adjusted p-values.
c
Gene functional annotation from Phytozome or maizesequence.org.