TABLE 2.
Relative abundance of the most abundant phylotypes of different saccharide treatmentsa
| Taxonomy of phylotype | Closest cultured microorganism | S (%)b | Relative abundance (%)c |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Pre | C | A | F | Ga | Gl | Mt | Mn | R | X | |||
| Proteobacteria | ||||||||||||
| Enterobacteriaceae | ||||||||||||
| Enterobacteriaceae-affiliated phylotype E [LT838793] | Klebsiella quasipneumoniae [NR_134062] | 100 | <1 | 2 | 33 | 7 | 5 | 3 | 2 | 3 | 3 | 4 |
| Enterobacter aerogenes [NR_102493] | 100 | |||||||||||
| Enterobacter xiangfangensis [NR_126208] | 100 | |||||||||||
| Enterobacteriaceae-affiliated phylotype C [LT838794] | Citrobacter freundii [NR_117752] | 100 | <1 | 1 | 13 | 16 | 28 | <1 | <1 | <1 | 1 | 1 |
| Citrobacter braakii [NR_117750] | 100 | |||||||||||
| Raoultella terrigena [NR_113703] | 100 | |||||||||||
| Enterobacteriaceae-affiliated phylotype R [LT838795] | Rosenbergiella australoborealis [NR_126305] | 100 | <1 | 3 | 4 | 10 | 4 | 9 | 10 | 5 | 4 | 21 |
| Rosenbergiella epipactidis [NR_126303] | 100 | |||||||||||
| Raoultella planticola [NR_113701] | 100 | |||||||||||
| Aeromonadaceae | ||||||||||||
| Aeromonas-affiliated phylotype A [LT838791] | Aeromonas lacus [NR_136831] | 100 | <1 | 58 | 37 | 43 | 50 | 77 | 78 | 77 | 79 | 55 |
| Aeromonas aquatica [NR_136829] | 100 | |||||||||||
| Aeromonas hydrophila [NR_074841] | 100 | |||||||||||
| Bradyrhizobiaceae | ||||||||||||
| Bradyrhizobium-affiliated phylotype [LT838788] | Bradyrhizobium japonicum [NR_119191] | 100 | 5 | 1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 |
| Bradyrhizobium neotropicale [NR_133987] | 100 | |||||||||||
| Bradyrhizobium ingae [NR_133985] | 100 | |||||||||||
| Hyphomicrobiaceae | ||||||||||||
| Rhodoplanes-affiliated phylotype [LT838789] | Rhodoplanes oryzae [NR_134156] | 97 | 5 | 1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 |
| Rhodoplanes piscinae [NR_115060] | 97 | |||||||||||
| Rhodoplanes elegans [NR_029125] | 97 | |||||||||||
| Fusobacteria | ||||||||||||
| Fusobacteriaceae | ||||||||||||
| Fusobacteriaceae-affiliated phylotype [LT838792] | Fusobacterium mortiferum [NR_117734] | 96 | <1 | 5 | 1 | 1 | 1 | 1 | <1 | 1 | 1 | 3 |
| Cetobacterium somerae [NR_025533] | 96 | |||||||||||
| Fusobacterium varium [NR_113384] | 95 | |||||||||||
| Verrucomicrobia | ||||||||||||
| Unclassified family | ||||||||||||
| Unclassified phylotype [LT838790] | Terrimicrobium sacchariphilum [NR_133878] | 92 | 5 | 1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 | <1 |
| Chthoniobacter flavus [NR_115225] | 90 | |||||||||||
| Verrucomicrobium spinosum [NR_026266] | 84 | |||||||||||
| Tenericutes | ||||||||||||
| Unclassified family | ||||||||||||
| Unclassified phylotype [LT838787] | “Candidatus Lumbricincola sp.” [FM165581] | 100 | 11 | 1 | <1 | 1 | 1 | <1 | <1 | 1 | 1 | 1 |
| “Candidatus Bacilloplasma” mollicute [DQ485975] | 91 | |||||||||||
| Staphylococcus massiliensis [KF600533] | 85 | |||||||||||
a
Accession numbers are in brackets. The table contains all phylotypes that had a relative abundance of at least 4% in at least one treatment. The fermentation profiles of the treatments are displayed in Fig. 1 and Table 1. All phylotypes are shown in Table S4.
b
S, similarity of 16S rRNA sequence.
c
Abbreviations: Pre, preincubation; C, unsupplemented control; A, arabinose supplemented; F, fucose supplemented; Ga, galactose supplemented; Gl, glucose supplemented; Mt, maltose supplemented; Mn, mannose supplemented; R, rhamnose supplemented; X, xylose supplemented.