Table 5.
Differentially expressed genes involved in auxin and gibberellin signaling.
| Gene ID | Gene Description | T_fpkm | WT_fpkm | log2 (Fold changes) | p-value |
|---|---|---|---|---|---|
| Auxin-related genes | |||||
| Solyc01g111310.2 | Auxin Efflux Facilitator (LAX2) | 11.01 | 25.92 | −1.24 | 0 |
| Solyc02g037550.2 | Auxin efflux carrier family protein | 12.14 | 36.84 | −1.6 | 0 |
| Solyc12g014500.1 | IAA carboxylmethyltransferase 1 (IAMT1) | 0.4 | 10.02 | −4.65 | 0.01 |
| Solyc09g090910.1 | Auxin-induced protein 13 (IAA13) | 8.74 | 25.32 | −1.53 | 0 |
| Solyc09g083290.2 | Indole-3-acetic acid inducible 14 (IAA14) | 4.85 | 11.4 | −1.23 | 0.04 |
| Solyc09g083280.2 |
AUX/IAA transcriptional regulator family protein
(IAA1) |
10.35 | 24.45 | −1.24 | 0.01 |
| Solyc09g064530.2 | Auxin-induced protein 12 (IAA12) | 6.26 | 29.27 | −2.22 | 0 |
| Solyc07g008020.2 | Indole-3-acetic acid inducible 35 (IAA35) | 5.61 | 15.42 | −1.46 | 0.02 |
| Solyc06g008590.2 | Indoleacetic acid-induced protein 17 (IAA17) | 6.84 | 43.15 | −2.66 | 0 |
| Solyc06g008580.2 | AUX/IAA transcriptional regulator family protein (IAA22) | 1.03 | 11.55 | −3.49 | 0.01 |
| Solyc04g081240.2 | Auxin Response Factor 5 (SlARF5) | 0.95 | 14.26 | −3.9 | 5.00E-05 |
| Solyc06g084070.2 | AUX/IAA gene family protein (IAA2) | 0.81 | 14.07 | −4.12 | 0 |
| Solyc09g083290.2 | AUX/IAA gene family protein (IAA24) | 4.85 | 11.4 | −1.23 | 0.04 |
| Solyc03g121060.2 | AUX/IAA gene family protein (IAA18) | 40.95 | 20.48 | 1 | 0.03 |
| Solyc08g082630.2 | Auxin Response Factor 9 A (SlARF9A) | 5.54 | 33.12 | −2.58 | 5.00E-05 |
| Solyc09g083290.2 | AUX/IAA gene family protein (SlIAA14) | 4.85 | 11.4 | −1.23 | 0.04 |
| Solyc01g107390.2 |
Auxin- and ethylene-responsive GH3-like protein
(GH3.1) |
3.48 | 1.42 | 1.3 | 0.05 |
| Solyc06g062920.2 | Auxin-regulated dual specificity cytosolic kinase | 23.67 | 2.69 | 3.14 | 5.00E-05 |
| Solyc06g075690.2 | Auxin-regulated protein AF416289 | 49.05 | 2.97 | 4.05 | 5.00E-05 |
| Gibberellin-related genes | |||||
| Solyc03g006880.2 | GA 20-oxidase-oxidase-1 (SlGA20ox1) | 0.14 | 36.35 | −8.02 | 0.03 |
| Solyc04g078390.1 | F-box family protein (SLY1) | 131.09 | 59.27 | 1.15 | 0 |
| Solyc07g054310.1 | Cell wall protein (GA-induced) | 789.25 | 204.58 | 1.95 | 0 |
| Solyc09g074270.2 | Alpha/beta-Hydrolases superfamily protein (GID1B) | 28.92 | 10.95 | 1.4 | 0 |
| Solyc02g083880.2 | Gibberellin-regulated family protein (similar to GASA2/GAST1 protein in Arabidopsis) | 474.19 | 55.53 | 3.09 | 0.00005 |
| Solyc01g10737 Solyc01g107370.2 | Gibberellin-regulated family protein (similar to cyclin-D3-1gene in Arabidopsis) | 0.49 | 8.56 | −4.12 | 0.05 |
| Solyc12g042500.1.1 | Gibberellin-regulated family protein (similar to Cyclin-T1-2 in Arabidopsis) | 36.76 | 95.5 | −1.38 | 0.04 |
| Solyc03g116060.2 |
Gibberellin-regulated family protein (similar to Gibberellin-regulated family protein in Arabidopsis) |
2.75 | 20.2 | −2.88 | 0 |