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Overview of single-cell phylogenetic methods. Abbreviation: MCMC, Markov chain Monte Carlo.
| Method | Phylogenetic representation | Inference |
|---|---|---|
| Kim and Simon [113] | Mutation tree | Pairwise ordering and maximum spanning tree |
| BitPhylogeny [114] | Clonal tree | Tree-structure stick-breaking MCMC |
| OncoNEM [115] | Sample/clonal tree | Greedy structure search |
| SCITE [116] | Mutation treea | MCMC |
SCITE [116] provides the option of using the sample tree representation.
