Table 1.
SNP set | Missing data per SNP site (%) | Total number of SNPs | Models tested |
---|---|---|---|
1 | 50 | 1,023,011 | KGD, GBLUP, RF |
2 | 10 | 249,546 | GBLUP, RR, RF |
3 | 1 | 43,966 | GBLUP, RR, RF |
RR ridge regression, RF random forest, KGD GBLUP using KGD-generated genomic relationship matrix