Table 2.
HT | WD | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
PBV-CV1 | EBV-all2 | EBV-all2 | ||||||||
Phenotype | ABLUP | GBLUP-A | GBLUP-AD | GBLUP-ADE | Phenotype | ABLUP | GBLUP-A | GBLUP-AD | GBLUP-ADE | |
Random folding | ||||||||||
ABLUP | 0.273 (0.004) | 0.615 (0.003) | 0.622 (0.003) | 0.619 (0.003) | 0.619 (0.003) | 0.292 (0.003) | 0.625 (0.002) | 0.649 (0.002) | 0.649 (0.002) | 0.646 (0.002) |
GBLUP-A | 0.283 (0.002) | 0.571 (0.002) | 0.690 (0.002) | 0.689 (0.002) | 0.689 (0.002) | 0.257 (0.006) | 0.545 (0.005) | 0.694 (0.004) | 0.694 (0.004) | 0.695 (0.004) |
GBLUP-AD | 0.276 (0.003) | 0.563 (0.002) | 0.682 (0.002) | 0.681 (0.002) | 0.681 (0.002) | 0.262 (0.003) | 0.547 (0.003) | 0.698 (0.002) | 0.698 (0.002) | 0.699 (0.002) |
GBLUP-ADE | 0.285(0.002) | 0.570 (0.002) | 0.688 (0.001) | 0.688 (0.001) | 0.688 (0.001) | 0.257 (0.004) | 0.544 (0.005) | 0.691 (0.005) | 0.691 (0.005) | 0.693 (0.004) |
Family folding | ||||||||||
ABLUP | NA3 | NA | NA | NA | NA | NA | NA | NA | NA | NA |
GBLUP-A | 0.085 (0.004) | 0.089 (0.010) | 0.254 (0.011) | 0.257 (0.011) | 0.257 (0.011) | − 0.021 (0.009) | 0.019 (0.012) | 0.204 (0.011) | 0.205 (0.011) | 0.220 (0.012) |
GBLUP-AD | 0.087 (0.010) | 0.100 (0.014) | 0.266 (0.016) | 0.271 (0.017) | 0.271 (0.017) | − 0.036 (0.012) | 0.010 (0.014) | 0.189 (0.015) | 0.191 (0.015) | 0.207 (0.015) |
GBLUP-ADE | 0.084 (0.009) | 0.093 (0.014) | 0.255 (0.015) | 0.258 (0.015) | 0.258 (0.015) | − 0.038 (0.008) | 0.001 (0.010) | 0.184 (0.010) | 0.186 (0.009) | 0.202 (0.009) |
1PBV-CV: predicted breeding values using cross-validation
2EBV-all: estimated breeding values using all data
3NA: predicted individual additive breeding value is equal to the overall mean of the model