Table 1.
Functional genomics for fibre traits
| Functional study aspect | Specific fibre trait | Cotton species (cultivar) | References |
|---|---|---|---|
| Jasmonate ZIM‐domain protein‐encoding (GhJAZ2) gene | Fibre initiation | G. hirsutum (TM‐1, YZ1 & Xu142) | Hu et al. (2016) |
| Bulb biogenesis 1 (GhRBB1_A07) gene | Fibre quality | G. hirsutum | Islam et al. (2016b) |
| Receptor‐like kinase (RLK) gene | Fibre strength | G. hirsutum (MD52ne & MD90ne) | Islam et al. (2016c) |
| Phytohormone‐related (PHYA1) gene | Fibre length | G. hirsutum (Coker 312) | Abdurakhmonov et al. (2014) |
| Homeodomain‐leucine zipper (GhHOX3) gene | Fibre elongation | G. hirsutum (R15), G. arboreum (Qinyangxiaozi), G. herbaceum & G. raimondii | Shan et al. (2014) |
| Calcium sensor (GhCaM7) gene | Fibre elongation | G. hirsutum | Tang et al. (2014) |
| Brassinosteroid catabolism (PAG1) gene | Fibre elongation | G. hirsutum (CCRI24) | Yang et al. (2014) |
| LIM domain‐encoding (WLIM1a) gene | Fibre elongation and secondary wall synthesis | G. hirsutum (R15) | Han et al. (2013) |
| Annexins (AnnGh3) gene | Fibre initiation and elongation | G. hirsutum (Xuzhou 142, Emian 9,10 & Coker 312) | Li et al. (2013a) |
| Plasma membrane intrinsic protein 2s encoding (PIP2s) gene | Fibre elongation | G. hirsutum (Xuzhou 142, Emian 9 & Coker 312) | Li et al. (2013b) |
| Proline‐rich proteins (PRP5) gene | Fibre length | G. hirsutum (Coker 312) | Xu et al. (2013) |
| Protodermal factor1 (GbPDF1) gene | Fibre initiation | G. barbadense (3‐79) & G. hirsutum (Xu142, Xu142 fl & YZ1) | Deng et al. (2012) |
| TCP transcription factor (GbTCP) gene | Fibre elongation | G. barbadense (3‐79) & G. hirsutum (YZ1) | Hao et al. (2012) |
| Sucrose synthase (GhSusA1) gene | Fibre length and strength | G. hirsutum (TM‐1 & 7235) | Jiang et al. (2012) |
| Homeodomain‐leucine zipper (GhHD‐1) gene | Fibre initiation | G. hirsutum (Acala Maxxa) | Walford et al. (2012) |
| MADS box protein‐coding (GhMADS11) gene | Fibre elongation | G. hirsutum (Coker312 & Xuzhou 142) | Li et al. (2011) |
| RAD‐like (GbRL1) gene | Fibre initiation | G. barbadense (Pima‐90) | Zhang et al. (2011a) |
| Auxin biosynthesis (iaaM) gene | Fibre initiation | G. hirsutum (Jimian 14) | Zhang et al. (2011c) |
| Xyloglucan endotransglycosylase/hydrolase (GhXTH) gene | Fibre elongation | G. hirsutum (Coker 312) | Lee et al. (2010) |
| Gibberellin 20‐oxidase (GhGa20ox1‐3) gene | Fibre initiation and elongation | G. hirsutum (Jimian 14) | Xiao et al. (2010) |
| Peroxidase‐encoding (GhPOX1) gene | Fibre elongation | G. hirsutum (Xuzhou 142) | Mei et al. (2009) |
| Calcium‐dependent protein kinase (GhCPK1) gene | Fibre elongation | G. hirsutum (TM‐1) | Huang et al. (2008b) |
| Steroid 5a‐reductase (GhDET2) gene | Fibre initiation and elongation | G. hirsutum (Jimian 14) | Luo et al. (2007) |
| Ethylene biosynthesis (ACO) genes | Fibre elongation | G. hirsutum (Xuzhou 142) | Shi et al. (2006) |
| GhMyb25 and the homeodomain genes | Fibre initiation | G. hirsutum (Xu 142 or XZ 142) & six lintless lines | Wu et al. (2006) |
| WDT‐repeat (GhTTG1‐GhTTG4) genes | Fibre initiation | Different cotton species | Humphries et al. (2005) |
| Actin cytoskeleton (ACTIN) genes | Fibre elongation | G. hirsutum (Coker 312) | Li et al. (2005) |