Table 4.
Functional genomics for biotic stress
| Functional study aspect | Biotic stress | Cotton species (cultivar) | References |
|---|---|---|---|
| Jasmonate ZIM‐domain (GhJAZ2) gene | Verticillium dahliae | G. hirsutum | He et al. (2017) |
| GR79‐EPSPS and N‐acetyltransferase (GAT) genes | Resistant to glyphosate | G. hirsutum (R18) | Liang et al. (2017) |
| Jasmonate ZIM‐domain interactor (NINJA) gene | Verticillium dahliae | G. hirsutum (BD18) | Wang et al. (2017a) |
| Ve homologous (Gbvdr3) gene | Verticillium dahliae | G. barbadense (7124) | Chen et al. (2016) |
| MYB transcription factor (GhMYB108) gene | Verticillium dahliae | G. hirsutum (BD18) | Cheng et al. (2016a) |
| Tectaria macrodonta (Tma12) gene | Cotton leaf curl virus and whitefly | G. hirsutum (Coker 312) | Shukla et al. (2016) |
| NAC transcription factor (GbNAC1) gene | Verticillium dahliae | G. barbadense (Xinhai 15 & Xinhai 16) | Wang et al. (2016c) |
| WRKY transcription factor (GbWRKY1) gene | Botrytis cinerea and V. dahliae | G. barbadense (7124) & G. hirsutum (YZ1) | Li et al. (2014a) |
| WRKY transcription factor (GhWRKY39‐1) gene | R. solanacearum and R. solani | G. hirsutum (Lumian 22) | Shi et al. (2014a) |
| Mitogen‐activated protein kinase (GhMPK6a) gene | Ralstonia solanacearum | G. hirsutum (Lumian 22) | Li et al. (2013e) |
| WRKY transcription factor (GhWRKY15) gene | Viral and fungal pathogens | G. hirsutum (Lumian 22) | Yu et al. (2012) |
| Mitogen‐activated protein kinase (GhMKK5) gene | Ralstonia solanacearum | G. hirsutum (Lumian 22) | Zhang et al. (2012) |
| Disease resistance (GhNDR1) and MAP kinase kinase 2 (GhMKK2) genes | Verticillium dahliae | G. hirsutum (Deltapine 90, R135, Phytogen 480WR, Phytogen 425RF, FM 832, PSC 355 & FM 9160B2F) | Gao et al. (2011) |
| WRKY transcription factor (GhWRKY3) gene | R. solani, Colletotrichum gossypii and F. oxysporeum | G. hirsutum | Guo et al. (2011) |
| Mitogen‐activated protein kinase (GhMPK16) gene | X. campestris pv. malvacearum, R. solani and C. gossypii | G. hirsutum (Lumian 22) | Shi et al. (2011) |
| Lignin‐related genes | Verticillium dahliae | G. barbadense (7124) & G. hirsutum (YZ‐1) | Xu et al. (2011) |
| Mitogen‐activated protein kinase (GhMPK7) gene | R. solani, C. gossypii and F. oxysporum f. sp. vasinfectum | G. hirsutum (Lumian 22) | Shi et al. (2010) |
| CCCH‐type zinc finger protein (GhZFP1) gene | R. solani | G. hirsutum (ZMS19) | Guo et al. (2009) |
| CP4 5‐enolpyruvylshikimate‐3‐phosphate synthase (CP4 EPSPS) gene | Resistant to glyphosate | G. hirsutum (Coker 312 & Coker130) | Chen et al. (2006) |
| Nonsymbiotic haemoglobin (GhHb1) gene | Verticillium dahliae | G. hirsutum (BD18) | Qu et al. (2005) |
| Synthetic antimicrobial peptide (D4E1) gene | F. verticillioides, V. dahlia, A. flavus and T. basicola | G. hirsutum (Coker 312) | Rajasekaran et al. (2005) |
| (+)‐δ‐Cadinene synthase (cdn1‐C4) gene | Bacterial blight | G. hirsutum | Townsend et al. (2005) |