Skip to main content
. Author manuscript; available in PMC: 2019 Feb 1.
Published in final edited form as: Methods. 2017 Dec 27;134-135:164–176. doi: 10.1016/j.ymeth.2017.12.015

Table 2.

The various R-based tools that have been discussed in this paper and used in our automated pipeline.

Name Availability Function

flowClean Free (Bioconductor) Removes anomalous events & cleans FCS files
flowAI Free (Bioconductor) Removes anomalous events & cleans FCS files
flowDensity Free (Bioconductor) Automated density-based cell population identification
flowType Free (Bioconductor) Phenotyping FCM assays
RchyOptimyx Free (Bioconductor) Cellular hierarchy optimization for FCM