Table 1.
Projects providing individual access to genomic data
| Project | Dates | Context | # Genomes Sequenced to date | Platform | Lab Report with Signout | Results returned | Report to Health Record | Raw Data to Participants | Accredited lab | Last updated |
|---|---|---|---|---|---|---|---|---|---|---|
| Harvard PGP | 2005- | Research | 352 | WGS | No | Y Filtered Variants w/ Lit Annot | No | Yes (variants) | No | Nov 2017 |
| BWH/Harvard MedSeq | 2011- | Research | 110 | WGS | Yes | Monogenic, Common, PGx | Yes | FASTQ | Yes | Nov 2017 |
| Mount Sinai HealthSeq | 2012–2015 | Research | 40 | WGS | No | Monogenic, Common, PGx | No | BAM, VCF | No | paper |
| Mayo “10 scientists” | 2012–2014 | Research | 10 | WES | No | Monogenic | No | Yes | No | paper |
| Institute for Systems Biology (ISB) Pioneer 100 | 2014 | Research | 108 | WGS | No | Monogenic, Common, PGx | No | BAM, VCF | No | paper |
| BWH/BCH/Harvard BabySeq Project | 2015– | Research | 160 | WGS | Yes | Monogenic, PGx | Yes | FASTQ | Yes | Nov 2017 |
| Nevada Institute of Personalized Medicine | 2015– | Research | 0 | WES | Yes | Monogenic, PGx | No | BAM, VCF | No | paper |
| NYGC Seeq.io | 2016- | Research | ~500 | WGS (ultra low coverage) | No | ancestry, microbiome | No | BAM | No | Feb 2017 |
| NIH All of Us | 2017- | Research | 0 | WGS | ? | ? | ? | ? | ? | Nov 2017 |
| 100,000 Genomes (UK) | 2015- | Research | 44,633 | WGS | Yes | Monogenic, PGx | Yes | Yesa | Yes | Jan 2018 |
Compiled as web site: Bobe, Jason. “sharing-genome-studies,” online: <http://blog.jasonbobe.net/sharing-genome-studies/>
aDoes not routinely provide access to BAM of VCF files, but participants are allowed to view the files on-site