Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Feb 16;8:3151. doi: 10.1038/s41598-018-21377-y

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Combined grapevine ATL gene co-expression biotic network. (A) The biotic network was constructed using the average log2FC matrix comparing treatment vs control for the different biotic stress-related conditions. Node color represents the assigned community cluster within the network. Diamonds designate grapevine ATL genes, whereas balls represent co-expressed genes. Ball size represents node degree, i.e. the number of connection for each node, as indicated. (B) Representation of gene expression in the 8 different biotic community clusters according to the log2FC calculated for each condition. The different colors represent the different experimental datasets (see Supplementary Material for experiment details). (C) Distribution of enriched MapMan BIN categories in the 8 different biotic community clusters. Only the first two levels of the MapMan BIN category hierarchy were shown. Bar color represents the different enriched MapMan BINs, while bar size represents the number of genes of assigned to a given MapMan BIN. On the right of each chart is reported the FDR value calculated for each enrichment. (D) Enrichment of cis-acting regulatory elements (CAREs) in the 8 different biotic community clusters. Bar size represents the proportion of co-expressed gene of a given cluster containing a given CARE, while on the right of each bar is reported the FDR value calculated for each CARE enrichment. FDR, false discovery rate.