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. 2018 Feb 13;9:215. doi: 10.3389/fmicb.2018.00215

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Copyright © 2018 Comtet-Marre, Chaucheyras-Durand, Bouzid, Mosoni, Bayat, Peyret and Forano.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Distribution of fungi and protozoa to CAZyme transcripts in rumen contents of a cow. Relative contribution of fungi (A) and protozoa (C) CAZyme mRNA detected by the FibroChip; taxonomic origin of fungi (B) and protozoa (D) transcripts detected by the FibroChip. Results presented are obtained with the GoArrays probes. A transcript was considered as detected when its SNR was >2 and at least 65% of the probes were positive. The relative SNR value was not taken into account for the graph representation. CAZyme families (A,C) and microorganism origin (B,D) were picked from CAZy (http://www.cazy.org) and taxonomic data of each detected transcript.