Table 1.
Detection of functional genes involved in PGPT plus N2-metabolim based on data assembled by IDBA-UD.
| Gene Name | ID of KEGG | ID of [denovogenes] |
MGZ31DRh
(Assembled by IDBA-UD) |
MGZ31J1DRh
(Assembled by IDBA-UD) |
Gene length2
(bp) |
||||
|---|---|---|---|---|---|---|---|---|---|
| Hits1 | Gene Abundance | Hits1 | Gene Abundance | p-value | FDR3 | ||||
| ACC deaminase | K01505 | _73123 | 83 | 0.08185 | 33 | 0.03254 | 1014 | 9.35E-07 | 6.32E-05 |
| Nitrogen fixation | |||||||||
| nifH | K02588 | _103473 | 63 | 0.07023 | 24 | 0.02676 | 897 | 1.04E-05 | 0.0004979 |
| nifD | K02586 | _19302 | 135 | 0.08893 | 59 | 0.03887 | 1518 | 7.25E-09 | 8.97E-07 |
| nifK | K02591 | _17563 | 108 | 0.06936 | 40 | 0.02569 | 1557 | 3.44E-09 | 4.61E-07 |
| nifA | K02584 | _9784 | 146 | 0.08004 | 57 | 0.03125 | 1824 | 3.79E-11 | 7.81E-09 |
| nifB | K02585 | _17564 | 150 | 0.09634 | 47 | 0.03019 | 1557 | 7.76E-15 | 2.89E-12 |
| nifE | K02587 | _12565 | 121 | 0.07101 | 50 | 0.02934 | 1704 | 9.02E-09 | 1.08E-06 |
| nifN | K02592 | _25697 | 97 | 0.06923 | 51 | 0.03640 | 1401 | 5.43E-05 | 0.0018917 |
| nifQ | K15790 | _182142 | 39 | 0.05462 | 12 | 0.01681 | 714 | 7.17E-05 | 0.0024326 |
| nifV | K02594 | _45566 | 91 | 0.07660 | 30 | 0.02525 | 1188 | 4.66E-09 | 6.03E-07 |
| nodB | K14659 | _219374 | 32 | 0.04848 | 8 | 0.01212 | 660 | 6.73E-05 | 0.0023008 |
| nodC | K14666 | _27548 | 112 | 0.08151 | 46 | 0.03348 | 1374 | 2.75E-08 | 2.92E-06 |
| fixA | K03521 | _121736 | 43 | 0.05101 | 11 | 0.01305 | 843 | 4.44E-06 | 0.0002400 |
| fixB | K03522 | _56616 | 85 | 0.07678 | 34 | 0.03071 | 1107 | 7.80E-07 | 5.34E-05 |
| fixC | K00313 | _32844 | 89 | 0.06804 | 28 | 0.02905 | 1308 | 1.68E-06 | 0.0001030 |
| fixJ | K14987 | _242433 | 40 | 0.06319 | 13 | 0.02054 | 633 | 9.83E-05 | 0.0030541 |
| fixL | K14986 | _23774 | 85 | 0.05940 | 41 | 0.02865 | 1431 | 3.14E-05 | 0.0012269 |
| Plant disease suppression | |||||||||
| β-1,3-glucanase | K01210 | _13389 | 26 | 0.01548 | ND 4 | 0.00025 | 1680 | 8.71E-09 | 1.06E-06 |
| _14945 | 125 | 0.07673 | 37 | 0.02271 | 1629 | 2.43E-13 | 7.38E-11 | ||
| Phosphate solubilization | |||||||||
| GDH | K00117 | _3387 | 227 | 0.09554 | 69 | 0.02904 | 2376 | 2.06E-22 | 1.54E-19 |
| Siderophore (iron carrier) | |||||||||
| dhbF | K04780 | _9 | 67 | 0.00774 | 202 | 0.02332 | 8661 | 6.20E-16 | 2.62E-13 |
| _2733 | ND 4 | 0.00025 | 44 | 0.01769 | 2487 | 1.37E-13 | 4.27E-11 | ||
| Nitrogen metabolism other related genes | |||||||||
| cynT/can | K01673 | _18558 | 43 | 0.02799 | 7 | 0.00456 | 1536 | 5.75E-08 | 5.62E-06 |
| ncd2/npd | K00459 | _25423 | 28 | 0.01990 | 6 | 0.00426 | 1407 | 7.31E-05 | 0.002472 |
| gltD | K00266 | _22286 | 105 | 0.07202 | 42 | 0.02881 | 1458 | 3.89E-08 | 3.97E-06 |
| gltB | K00265 | _122 | 160 | 0.03439 | 47 | 0.01010 | 4653 | 8.38E-17 | 3.85E-14 |
| _106 | 461 | 0.09701 | 205 | 0.04314 | 4752 | 5.49E-26 | 5.06E-23 | ||
| _2287 | 68 | 0.02623 | 24 | 0.00926 | 2592 | 1.31E-06 | 8.42E-05 | ||
| nirK | K00368 | _31799 | 1 | 0.00076 | 54 | 0.04091 | 1320 | 4.54E-15 | 1.73E-12 |
| nirB | K00362 | _2403 | 77 | 0.03013 | 41 | 0.01604 | 2460 | 0.000404 | 0.009216 |
| _2606 | 74 | 0.02947 | 24 | 0.00956 | 2511 | 9.77E-08 | 8.86E-06 | ||
| _2886 | 214 | 0.08699 | 85 | 0.03455 | 2460 | 2.68E-15 | 1.05E-12 | ||
1 The number of hits represented the number of mapped reads of single denovogene detected in the sample.
2 The gene length (bp) was listed according to those denovogenes assembled by IDBA-UD.
3 The value in the table cell was underlined when FDR was less than 0.01 but more than 0.001.
4 ND = Not Detected.