Table 2.
Copy number variation in the tumor exome.
| Gene | Effect | Genotype |
|---|---|---|
| ARID1B | Deletion | 0:−1 |
| BRAF | Amplification | 3:AAB |
| CASP8 | Amplification | 4:AAAB |
| EZH2 | Amplification | 3:AAB |
| FGFR2 | Deletion | 0:−1 |
| IDH1 | Amplification | 3:AAB |
| MAP2K4 | Deletion | 0:−1 |
| MET | Amplification | 3:AAB |
| MLL3 | Amplification | 3:AAB |
| MYC | Amplification | 3:AAB |
| NCOR1 | Amplification | 8:AAAAAABB |
| NFE2L2 | Amplification | 3:AAB |
| PRDM1 | Deletion | 0:−1 |
| SF3B1 | Amplification | 4:AAAB |
| SMO | Amplification | 3:AAB |
| TNFAIP3 | Deletion | 0:−1 |
| TP53 | Deletion | 0:−1 |
Genotype: Allele number/Allele genotype. NC: Not calculated.