Table 2.
Repeats fragment found in assembled contigs
| Family | Subfamily | Fragments | Length |
|---|---|---|---|
| Endogenous Retrovirus | |||
| ERV | 7 | 3384 | |
| ERV1 | 6 | 3300 | |
| ERV2 | 20 | 8745 | |
| ERV3 | 10 | 7107 | |
| Non-LTR Retrotransposon | |||
| L1 | 2 | 681 | |
| SINE2/tRNA | 1 | 194 | |
| Pseudogene | |||
| rDNA | 4 | 3587 | |
| Total | 50 | 26,998 | |
Endogenous retroviruses are the most abundant family of transposable elements in assembled contigs. Column names means: fragments – the amount of contigs’ fragments with similarity to the subfamily indicated; length – total fragments’ length of the subfamily indicated