Table 5.

Percentage of ChrmC reads mapped to ERV internal sequences and LTRs with Bowtie2 tool

ERV internal part				ERV LTR
	Repbase name	Read mapped %	Class		Repbase name	Read mapped%	Class
1	IAPEz-int	1.148	ERV2	1	MTA_Mm	0.274	ERV3
2	MERV3-int	0.238	ERV3	2	MTD	0.260	ERV3
3	MTA_Mm-int	0.164	ERV3	3	MT2B	0.241	ERV3
4	IAPEY3-int	0.163	ERV2	4	MTC	0.223	ERV3
5	RLTR6-int	0.131	ERV2	5	RLTR12B	0.221	ERV2
6	ORR1B1-int	0.122	ERV3	6	RLTR20A4	0.201	ERV2
7	MMERVK10C-int	0.119	ERV2	7	RLTR9D	0.176	ERV2
8	RLTR10-int	0.153	ERV3	8	RMER20A	0.141	ERV2
9	MTD-int	0.108	ERV2	9	MTEb	0.114	ERV3
10	ORR1D1-int	0.093	ERV2	10	MTB	0.110	ERV3

The sequence names are according to Repbase. Ten most numerous elements are shown