Table 3.
Conserved signature indels (CSIs) specific to members of the “Abscessus-Chelonae” clade.
| Protein name | Accession number | Figure number | Indel size | Indel position | Specificity |
|---|---|---|---|---|---|
| Uracil phosphoribosyltransferase | WP_052618900 | Figure 5A Supplementary Figure 18 | 6aa ins | 161–199 | “Abscessus-Chelonae” Clade |
| L-histidine N(alpha)-methyltransferase | WP_052620488 | Figure 5B Supplementary Figure 19 | 4aa del | 94–130 | |
| DUF58 domain-containing protein | WP_074245867 | Supplementary Figure 20 | 10aa ins | 364–407 | |
| NADH-quinone oxidoreductase subunit G | WP_062878914 | Supplementary Figure 21 | 4aa ins | 724–762 | |
| ATP-dependent helicase | WP_052624897 | Supplementary Figure 22 | 3aa ins | 169–208 | |
| tRNA (cytidine(34)-2′-O)-methyltransferase | WP_005056099 | Supplementary Figure 23 | 1aa del | 13–52 | |
| Glutamine-fructose-6-phosphate transaminase (isomerizing) | WP_052618678 | Supplementary Figure 24 | 1aa del | 49–81 | |
| Error prone DNA polymerase | WP_052620523 | Supplementary Figure 25 | 1aa ins | 674–715 | |
| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase | WP_052622963 | Supplementary Figure 26 | 2aa del | 39–78 | |
| DEAD/DEAH box helicase | WP_052619503 | Supplementary Figure 27 | 1aa del | 253–295 | |
| Anion transporter | WP_052620306 | Supplementary Figure 28 | 1aa del | 51–90 | |
| Membrane protein | WP_005081027 | Supplementary Figure 29 | 6aa ins | 331–379 | |
| Nicotinate-nucleotide adenylyltransferase | WP_005074554 | Supplementary Figure 30 | 2aa del | 124–163 | |
| CoA ester lyase | WP_052529870 | Supplementary Figure 31 | 2aa del | 172–207 | |
| Hypothetical protein | WP_052613689 | Supplementary Figure 32 | 6aa ins | 342–382 | |
| Hypothetical protein | WP_052613689 | Supplementary Figure 33 | 2aa del | 808–844 | |
| Hypothetical protein | WP_057138049 | Supplementary Figure 34 | 2aa ins | 359–399 | |
| Hypothetical protein | WP_052618664 | Supplementary Figure 35 | 1aa del | 199–235 | |
| Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | WP_052543860 | Supplementary Figure 36 | 3aa ins | 318–354 | |
| Hypothetical protein | WP_052621243 | Supplementary Figure 37 | 1aa del | 181–208 | |
| Pyridoxal phosphate-dependent aminotransferase | WP_057138073 | Supplementary Figure 38 | 4aa ins | 157–194 | |
| Carotenoid oxygenase | WP_062880095 | Supplementary Figure 39 | 1aa ins | 221–259 | |
| Hypothetical protein | WP_062879314 | Supplementary Figure 40 | 1aa del | 139–168 | |
| Hypothetical protein | WP_062879407 | Supplementary Figure 41 | 3aa ins | 340–367 | |
| SAM-dependent methyltransferase | WP_062879423 | Supplementary Figure 42 | 2aa ins | 92–128 | |
| SAM-dependent methyltransferase | WP_062879423 | Supplementary Figure 43 | 1aa ins | 12–47 | |
| Phosphoribosylamine-glycine ligase | CKM81105 | Supplementary Figure 15 | 2aa ins | 106–161 |