Table 4.

Conserved Signature Indels (CSIs) specific for members of the “Fortuitum-Vaccae” clade, Slow-Growing Mycobacterium (“Tuberculosis-Simiae” + “Terrae” clades), and “Tuberculosis-Simiae” clade.

Protein name	Accession number	Figure number	Indel size	Indel position	Specificity
LacI family transcriptional regulator	WP_036341761	Figure 6 Supplementary Figure 44	5aa ins	189–231	“Fortuitum-Vaccae” Clade
Cyclase	WP_066808156	Supplementary Figure 45	2aa ins	243–280
CDP-x	WP_036344961	Supplementary Figure 46	1aa ins	49–75
CDP-diacylglycerol–serine O-phosphatidyltransferase	WP_066811333	Supplementary Figure 47	1aa del	112–160
Alkyl/aryl sulfatase	WP_083113621	Figure 7 Supplementary Figure 48	1aa ins	123–155	Mycobacterium Slow-Growers
Succinate dehydrogenase iron-sulfur subunit	WP_083139296	Supplementary Figure 49	4aa ins	30–68
Hypothetical protein	WP_009976218	Supplementary Figure 50	1aa del	51–100
Hypothetical protein	WP_031701648	Figure 8 Supplementary Figure 51	1aa del	81–119	“Tuberculosis-Simiae” Clade
Aldehyde dehydrogenase family protein	WP_080699385	Supplementary Figure 52	2aa del	403–450
23S rRNA (guanosine(2251)-2′-O)-methyltransferase RlmB	WP_083139967	Supplementary Figure 53	1aa del	136–176