Table 1.
Published datasets related to endometriosis (A) and multiple sclerosis (B) used in this study.
| GEO accession | Platform | No. of probes | No. of samples (control/disease) | Tissue stage | References |
|---|---|---|---|---|---|
| (A) ENDOMETRIOSIS (EMS) | |||||
| GSE7305 | GPL570: [HG-U133_Plus_2] | 54675 | 20 (10/10) | Follicular phase/Ovarian-Follicular phase | Hever et al., 2007 |
| GSE7307 | GPL570: [HG-U133_Plus_2] | 54675 | 41 (23/18) | Follicular phase/Ovarian-Follicular phase | Unpublished |
| GSE6364 | GPL570: [HG-U133_Plus_2] | 54675 | 11 (05/06) | Follicular phase/Uterus-Proliferative | Burney et al., 2007 |
| GSE51981 | GPL570: [HG-U133_Plus_2] | 54675 | 64 (35/29) | Follicular phase/Uterus-Proliferative | Tamaresis et al., 2014 |
| GSE11691 | GPL96: [HG-U133A] | 22283 | 18 (09/09) | Follicular phase/Uterus-Proliferative | Hull et al., 2008 |
| GSE7846 | GPL570: [HG-U133_Plus_2] | 54675 | 10 (05/05) | Follicular phase/Uterus-Proliferative | Sha et al., 2007 |
| GSE25628 | GPL571: [HG-U133A_2] | 22277 | 22 (15/07) | Follicular phase/Uterus-Proliferative | Crispi et al., 2013 |
| GSE6364 | GPL570: [HG-U133_Plus_2] | 54675 | 09 (03/06) | Lutal phase/Uterus-Secretory phase (Early) | Burney et al., 2007 |
| GSE51981 | GPL570: [HG-U133_Plus_2] | 54675 | 30 (12/18) | Lutal phase/Uterus-Secretory phase (Early) | Tamaresis et al., 2014 |
| GSE6364 | GPL570: [HG-U133_Plus_2] | 54675 | 17 (08/09) | Lutal phase/Uterus-Secretory phase (Mid) | Burney et al., 2007 |
| GSE51981 | GPL570: [HG-U133_Plus_2] | 54675 | 50 (22/28) | Lutal phase/Uterus-Secretory phase (Mid) | Tamaresis et al., 2014 |
| Total | 292 (147/145) | ||||
| (B) MULTIPLE SCLEROSIS (MS) | |||||
| GSE38010 | GPL570: [HG-U133_Plus_2] | 33398 | 07 (02/05) | Brain/Early, active and late stage of MS | Han et al., 2012 |
| GSE26484 | GPL570: [HG-U133_Plus_2] | 54675 | 10 (04/06) | Peripheral blood/Low & high serum sema4A levels | Nakatsuji et al., 2012 |
| GSE21942 | GPL570: [HG-U133_Plus_2] | 54675 | 29 (15/14) | Peripheral blood/NA | Kemppinen et al., 2011 |
| GSE41890 | GPL6244: [HuGene-1_0-st] | 695 | 36 (12/24) | Peripheral blood/Remission & Relapse | Irizar et al., 2014 |
| GSE16461 | GPL570: [HG-U133_Plus_2] | 54675 | 16 (08/08) | Peripheral blood/Monozygotic twins (MZ) | Annibali et al., 2011 |
| GSE41849 | GPL16209: [HG Exon 1.0 ST] | 18725 | 25 (13/12) | Whole blood/Baseline | Nickles et al., 2013 |
| GSE41849 | GPL16209: [HG Exon 1.0 ST] | 18725 | 24 (12/12) | Whole blood/Follow-up year 1 | Nickles et al., 2013 |
| GSE41848 | GPL16209: [HG Exon 1.0 ST] | 18725 | 69 (28/41) | Whole blood/Baseline | Nickles et al., 2013 |
| GSE41848 | GPL16209: [HG Exon 1.0 ST] | 18725 | 88 (31/57) | Whole blood/Follow-up year 1/2 | Nickles et al., 2013 |
| Total | 304 (125/179) | ||||