TABLE 2.

Differentially expressed genes corresponding to differentially abundant proteins detected by proteomic methods

Gene no. in B8 genome	Gene no. in 26695/J99 genome	Gene name or function	Differential expression detected by:
			2D-DIGEa,c	MudPIT 26695b,c	MudPIT 7.13b,c	iTRAQ 26695b,c	iTRAQ 7.13b,c	Biotinylation 26695b,c
HPB8_106	HP1435	pspA			Yes
HPB8_162d	HP1317	rplW			Yes
HPB8_188d	HP1426	Predicted					Yes
HPB8_195	HP1286	Secreted protein					Yes
HPB8_234	HP1246	rpsF			Yes
HPB8_235	HP1245	ssb			Yes
HPB8_394	HP1100	porA			Yes
HPB8_439	HP0389	sodB			Yes
HPB8_475	HP1412	Predicted			Yes		Yes
HPB8_555	jhp1408	Predicted					Yes
HPB8_761	HP0565	Predicted		Yes	Yes
HPB8_800	HP0601	flaA	Yes		Yes
HPB8_829	HP0630	mda66	Yes		Yes		Yes
HPB8_844	HP0642	frxA	Yes		Yes		Yes
HPB8_897	HP0696	acxB					Yes
HPB8_938	HP0731	Predicted		Yes
HPB8_958	HP0751	flaG			Yes		Yes
HPB8_1010	HP0802	ribA				Yes
HPB8_1017	HP0809	fliL			Yes
HPB8_1247	HP0318	Predicted			Yes
HPB8_1271	HP0291	pheA					Yes
HPB8_1336	HP0229	hopA			Yes		Yes
HPB8_1430	HP0135	Predicted			Yes
HPB8_1450	HP0115	flaB			Yes
HPB8_1493	HP0072	ureB			Yes
HPB8_1600	HP0025	hopD			Yes		Yes
HPB8_1701	HP1399	rocF	Yes
HPB8_1702	HP1400	fecA3		Yes	Yes	Yes	Yes	Yes
HPB8_p0002	jhp0828	Predicted					Yes

^aLoh et al., 2012 (16).

^bVoss et al., 2015 (19).

^c“Yes” indicates that differential expression was detected at the protein level in the indicated study.

^dIn two cases, the direction of change in response to high-salt conditions (i.e., upregulation or downregulation) was nonconcordant when RNA-seq results were compared with proteomic results.