Table 1.

Overview of miRNA sequencing data

Samples	Raw reads	Q30 (%)	Clean reads	Annotated readsa	Unannotated readsb	Mapped Small RNA Reads
Control	24,672,171	94.37	20,608,579 (100.00%)	4,450,129 (21.59%)	16,158,450 (78.41%)	13,048,593 (63%)
S. aureus	18,365,120	94.57	15,600,273 (100.00%)	3,047,805 (19.65%)	12,552,468 (80.46%)	10,420,961 (67%)
E. coli	19,677,779	94.46	16,681,613 (100.00%)	3,031,171 (18.17%)	13,650,442 (81.83%)	11,309,412 (68%)

^a Annotated reads include rRNA, tRNA, snRNA, snoRNA, ncRNA, repbase.

^b miRNAs are contained in unknown unannotated reads.